PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03830.1.g00090.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YB
Protein Properties Length: 1537aa    MW: 165848 Da    PI: 9.6741
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03830.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB73.34e-2383173595
                         NF-YB   5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                                   d+ l  + ++r+m+ vl a+ k+s  ak++vq c+ efi  v +ea+++c++++r+ ++++d+  +l +lG++ y+e + +
  Zmw_sc03830.1.g00090.1.am.mk  83 DNQLSRSGIARMMRAVLDAQVKVSCPAKNLVQTCAKEFIVAVVDEATKQCHQNDRQMLTPEDIALSLRSLGLNSYIELMGT 163
                                   67778889************************************************************************* PP

                         NF-YB  86 ylkkyreleg 95 
                                   yl++yre+ +
  Zmw_sc03830.1.g00090.1.am.mk 164 YLRRYRETPR 173
                                   ******9865 PP
2NF-YB168.86.7e-53441536297
                         NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 
                                   reqdr++Pianv+rim++vlPa+akis+daket+qecvse+isf+t+ea+++cqre+rkti+++d+lwa++ lGf+dyvep
  Zmw_sc03830.1.g00090.1.am.mk 441 REQDRLMPIANVIRIMRRVLPAHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSRLGFDDYVEP 521
                                   89******************************************************************************* PP

                         NF-YB  83 lkvylkkyrelegek 97 
                                   l+vyl++yre+ege 
  Zmw_sc03830.1.g00090.1.am.mk 522 LSVYLHRYREFEGEA 536
                                   ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-2277186IPR009072Histone-fold
SuperFamilySSF471133.42E-1883181IPR009072Histone-fold
PfamPF008081.7E-989148IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.104.1E-48434540IPR009072Histone-fold
SuperFamilySSF471135.43E-37443550IPR009072Histone-fold
PfamPF008084.9E-24447510IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006159.0E-15474492No hitNo description
PROSITE patternPS006850477493IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006159.0E-15493511No hitNo description
PRINTSPR006159.0E-15512530No hitNo description
Gene3DG3DSA:2.60.40.4201.6E-3210341140IPR008972Cupredoxin
SuperFamilySSF495031.58E-2910341136IPR008972Cupredoxin
CDDcd110196.22E-5210351136No hitNo description
PROSITE profilePS5148538.70810351137IPR003245Phytocyanin domain
PfamPF022986.5E-2210451129IPR003245Phytocyanin domain
ProDomPD0031221.0E-1510731135IPR003245Phytocyanin domain
PfamPF056273.2E-2012961331IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009055Molecular Functionelectron carrier activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1537 aa     Download sequence    Send to blast
MVGVTASISR HGRGQRTDRR SCTLPWRHGI TRAQGRLSGK LPLCHARKPG HGADDNGVSQ  60
RCEQQAWYYA QQLARGEEEE PSDNQLSRSG IARMMRAVLD AQVKVSCPAK NLVQTCAKEF  120
IVAVVDEATK QCHQNDRQML TPEDIALSLR SLGLNSYIEL MGTYLRRYRE TPRPRDGARE  180
SDSTSAPAPA AGDLSDEELL QILDQTMDDA IGNGRLDLQD EGYSVPGSFW LGCRQNQRKK  240
RGEWSGARGS GAWGTIHQTP RVIDAVVRMA IASKNTTLKL AVLSHSTIGF DGTASFSSGV  300
LCMRWLLMAL SERRRLPVAS DEFSRERWAS GPESRLSARP VAGAGPTAGL SGTADQRVLP  360
GLLLVMSRCM HAFALRFPSL PFPSFSSGQR NQATLSPHSP PSQRALAASS SQPMDSIFPA  420
GATANGGGGG AQAQQAAPAI REQDRLMPIA NVIRIMRRVL PAHAKISDDA KETIQECVSE  480
YISFITGEAN ERCQREQRKT ITAEDVLWAM SRLGFDDYVE PLSVYLHRYR EFEGEARGVV  540
GAARGGGGGV DHHHHHQMFN SLAPATAHHH DMQVHAAMYG GAAVPPHHGF AAPPPHQGQY  600
MPYPYDTYGG EHAMAAYYGA GAYGPGNGGD GSGGSASHTS QAGGTSSLEH QHPFASKERK  660
TSPILKADAA KYSNQDIYER AREDVASCNS TVAREPAAGL AAEAAGRRAL TGAGKHAAPI  720
GPDYITGLRF VSPAPVHALL AVASGTADRS APSYLCMRLR SAPQCPTAFP CHLGWRRLLW  780
NIRRWLLSIS RSSTLPLLSY NVNPFIVHYF LSIHTIVIIC VLIKCKEGWF HLLREAVDLV  840
GPHKVGEFEV EPTFCPAPSA ASRSRSARAP RSSGRRPTRS RLASRVTPHR PPFRRVPPSQ  900
RAAAAAAAEP LVKRQSRAVQ QTLEGADQRL VEKQRLFSES PTARPLRTSA THSALDHRRH  960
PFGSQPCRLY KPLPARRQLA TIHTPTSRVE RSCVRSFQSD HRSIFASMAA TTLRFAVFAA  1020
SCALLAASVS SLPAAVFSVG DEKGWTVPLG NGTESYNHWA KRNRFQVGDV LEFKYVNDSV  1080
LVVNHDEYKQ CSTEAPLNRF TDGETKFTFD RSGLFYFVSG VPGHCEAGQR MIARVLAPSS  1140
LTITPAAAPG MPPTAPVVAP TAPSSSGAAS STTPTPTPTA QPSGADRVFA SVVLGLVEVA  1200
FLAVYLVTQA HRDPGLGSQE RHCDPDKGLG GGALLGGSEA AAASESSPFP SRPRERVLPL  1260
ARRHQQASKG KIFLGPLKKP ASDVAGQPGL CRWQDANGRT LPKFGEWDVN NPASADGFTV  1320
IFSKARDEKK APPAKGHISN RSADSKGSRT EKMSSYNSTR TSASATLELF DPGTRQRHEH  1380
YVLSNQFQFL PSPLSSFPHA PTRRLLLPLR LLMADASLSS STAGDAPPAA PVPAADAPDA  1440
GVAAETPDPD VEFGFQRPEM GKEKLAGTVQ FYERHVILCY KGPEAWASHV EAALPDRIPG  1500
LLAAAIKANK PNLKKPVSTD LSPLTIASLF RLGFGCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_A1e-5583531697NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20138331