PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03771.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 392aa MW: 42096.6 Da PI: 10.4858

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03771.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.1	2.8e-31	326	384	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYeg+Hnh+ Zmw_sc03771.1.g00020.1.am.mk 326 ADEFSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGDHNHN 384 69***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	3.3E-13	281	323	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	8.7E-34	313	384	IPR003657	WRKY domain
PROSITE profile	PS50811	29.987	320	386	IPR003657	WRKY domain
SuperFamily	SSF118290	8.24E-27	323	384	IPR003657	WRKY domain
SMART	SM00774	2.5E-38	325	385	IPR003657	WRKY domain
Pfam	PF03106	8.7E-27	327	383	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MEPSSVEGME EANRAAVQSC HRVLALLSNP HGHLVSNKDL AAATGEAVSK FGSLTSRLAS 60 GDGHQGHAKV RNVKRPLPII DSNLFLESPA VAAAAAARTP RPGPSTSLQL FSRYQQQQGE 120 GSGSSSKEPV RIPAHFPKRL LLDNPAVDAL PIKLVQPVSV APPAGPPHPA LPAAHLQFIQ 180 QHQSYQRYQF MQQMQIQSEM MKRSSLGDQG HQGGSGGAAG GKGVNLKFDS SNCTASSSRS 240 FLSSLSLEGS LASLDGSRAS RPFQLVSGSQ TSSNPEPSVQ RRKCTGREDG SGRCATRCHC 300 AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR 360 KHVERCVDDP SMLIVTYEGD HNHNRALAQP AA

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MEPSSVEGME EANRAAVQSC HRVLALLSNP HGHLVSNKDL AAATGEAVSK FGSLTSRLAS  60
GDGHQGHAKV RNVKRPLPII DSNLFLESPA VAAAAAARTP RPGPSTSLQL FSRYQQQQGE  120
GSGSSSKEPV RIPAHFPKRL LLDNPAVDAL PIKLVQPVSV APPAGPPHPA LPAAHLQFIQ  180
QHQSYQRYQF MQQMQIQSEM MKRSSLGDQG HQGGSGGAAG GKGVNLKFDS SNCTASSSRS  240
FLSSLSLEGS LASLDGSRAS RPFQLVSGSQ TSSNPEPSVQ RRKCTGREDG SGRCATRCHC  300
AKKRKLRIRR SIKVPAISNK VADIPADEFS WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR  360
KHVERCVDDP SMLIVTYEGD HNHNRALAQP AA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-19	323	384	12	72	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632919.1	0.0	protein WRKY1
Swissprot	Q32SG4	0.0	WRKY1_MAIZE; Protein WRKY1
TrEMBL	A0A0E0D6P5	0.0	A0A0E0D6P5_9ORYZ; Uncharacterized protein
STRING	OMERI03G30220.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10250	32	42