PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03755.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 578aa    MW: 61963.7 Da    PI: 10.259
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03755.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19404454256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g+
  Zmw_sc03755.1.g00040.1.am.mk 404 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAAIAYDKAAFRLRGA 454
                                   59******9.**********955...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.95E-30403461No hitNo description
SuperFamilySSF541719.81E-22404461IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-31404462IPR001471AP2/ERF domain
PROSITE profilePS5103223.037404461IPR001471AP2/ERF domain
SMARTSM003801.4E-35404467IPR001471AP2/ERF domain
PfamPF008472.3E-12405453IPR001471AP2/ERF domain
PRINTSPR003677.4E-10405416IPR001471AP2/ERF domain
PRINTSPR003677.4E-10427443IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MPHERISPPR HVLPLKIARA NKLRELSTRR QCPVDVLGGR PNLPLAVIRE FGAPPPFHKR  60
TVPFHIHRRR HRVADACMRS SAEHADAAPA GPGTSTPMRS NQRRHPVRGA ARRRSYPPGR  120
DLATSDRPGR AGKRLIVTGT MARVDASDER PCPGSEGVGL LGACVAPITG TVEHGSASDA  180
SASASSPTTL HTTAQHKPSL PSPPRNHQPI HFPGEAELSV PTPNPTATTR HHGGDSLLFI  240
LVMAAIDLYT NQLSSASSSS SADQELMKAL EPFIRSASPT STFTSTSPFY SYTSHATSAL  300
PQDSYHYFPA SSSYYTALPP PPAPTATSFS QLPPLPPSSS YASPATLVDG AAGLAHLSQA  360
QIQQIQTQLL AQQHQQQQRG LAASFLGPRA QLMKHPSSAA AGKLYRGVRQ RHWGKWVAEI  420
RLPRNRTRLW LGTFDSAEDA AIAYDKAAFR LRGAAARLNF PSLRRGGAHL AGPLDASVDA  480
KLAAICRSLD ASTKPRAAAH PDSPKASAST TTSEGDESVH SASSPPPLTA PSQQLQKPAP  540
PLPEMASLDF TEAPWDESAT FHLDKFPSWE IDWDAILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-21400461163ATERF1
3gcc_A5e-21400461163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659105.11e-118ethylene-responsive transcription factor RAP2-13
TrEMBLA0A3L6PCC81e-120A0A3L6PCC8_PANMI; Ethylene-responsive transcription factor RAP2-13-like
STRINGPavir.Da01302.1.p1e-137(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203