PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03738.1.g00030.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 104aa    MW: 11209.5 Da    PI: 4.6718
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03738.1.g00030.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.13.3e-1044100148
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk........leleev.ikev.diykvePwdLp 48 
                                   lp+G++F+Ptd+el+ e+L++kv+  +        ++++   i+   +i++++P++Lp
  Zmw_sc03738.1.g00030.1.sm.mk  44 LPAGVKFDPTDQELI-EHLEAKVRPGTgaapshplIDEFIPtIEGEdGICYTHPEKLP 100
                                   799************.99******999888886553333334776646*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-1135102IPR003441NAC domain
PROSITE profilePS5100511.99944104IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MDGGASTAAT SGGNLQEQRK YMSESSCCPR CGHKINRLLD WVGLPAGVKF DPTDQELIEH  60
LEAKVRPGTG AAPSHPLIDE FIPTIEGEDG ICYTHPEKLP GEFS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966092.12e-49uncharacterized protein LOC101753253
RefseqXP_015641894.13e-49NAC domain-containing protein 75 isoform X1
RefseqXP_015641895.12e-49NAC domain-containing protein 75 isoform X2
SwissprotQ9M0F86e-33NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A0P0WYC63e-49A0A0P0WYC6_ORYSJ; Os06g0560300 protein
TrEMBLA3BCR41e-49A3BCR4_ORYSJ; Uncharacterized protein
TrEMBLC7J3W61e-50C7J3W6_ORYSJ; Os06g0560300 protein
STRINGBRADI1G37900.17e-51(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145338117
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]