PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03716.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 677aa MW: 71781.1 Da PI: 9.8817

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03716.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	98.2	7.2e-31	97	181	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW++qe+laL+++r++m+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en+ k+yk++ke++ +r ++ +t+++ Zmw_sc03716.1.g00030.1.am.mk 97 RWPRQETLALLKIRQDMDAAFRDATLKGPLWEQVSRKLAEQGYNRSAKKCKEKFENVVKYYKRTKESRAGR--NDGKTYRF 175 8******************************************************************97..56668* PP trihelix 82 fdqlea 87 f+qlea Zmw_sc03716.1.g00030.1.am.mk 176 FTQLEA 181 ****85 PP
2	trihelix	108.7	3.9e-34	465	550	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k ev+aLi++r+++++r++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e s+tcpy Zmw_sc03716.1.g00030.1.am.mk 465 RWPKAEVHALIQLRSNLDTRYQDAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEGSKTCPY 544 8*******************************************************************8.99999 PP trihelix 82 fdqlea 87 f+ql+a Zmw_sc03716.1.g00030.1.am.mk 545 FHQLDA 550 **85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	5.4E-4	94	156	IPR001005	SANT/Myb domain
Pfam	PF13837	4.8E-21	96	182	No hit	No description
PROSITE profile	PS50090	7.236	96	154	IPR017877	Myb-like domain
CDD	cd12203	1.28E-27	97	161	No hit	No description
PROSITE profile	PS50090	7.166	458	522	IPR017877	Myb-like domain
SMART	SM00717	0.0051	462	524	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-4	463	521	IPR009057	Homeodomain-like
Pfam	PF13837	7.3E-24	464	551	No hit	No description
CDD	cd12203	3.51E-29	465	529	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MQQQQQHGGG GRAGGGGGAA QQFGAQQVEM PPPPFSPAGQ RISAAEAPSP ISSRPPVLHQ 60 LDELGASGAG AGGFDAEGLA AAAAGEEGAS GGSAGSRWPR QETLALLKIR QDMDAAFRDA 120 TLKGPLWEQV SRKLAEQGYN RSAKKCKEKF ENVVKYYKRT KESRAGRNDG KTYRFFTQLE 180 ALHATGSPAS AAPSPATSFA PPSTTVGVSG PLPVRAPAEP PPSVSAGAGA GMLPTMGNVS 240 FSTSNTEDYS DDDDSDDEGT QELGGGADER GKRKRLSEGA AAAGGSGGGK MMRFFEGLMK 300 QVLERQEVMQ QRFLEAIEKR EQDRMIREEA WRRQEMAHLA REQEILAQER AMAASRDAAV 360 LSFIQKITGQ TIPMPSIAAP AINVMPPPAS HPPPQPHPMP AVSAPPSGSH TPPPQPKPSP 420 QPHKSPAPAT PTQQQPSDIV MMPADAPHAD TPGHDGSGGG ASSSRWPKAE VHALIQLRSN 480 LDTRYQDAGP KGPLWEEISA GMRRLGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPEGSK 540 TCPYFHQLDA LYRNKALSSS GRGAAVHAHA SSAPQETVKV TAAAAISQTP PPPSQPSQSS 600 QHAAKTGKGK GGSAASEHGS SGSTNGSVAG AKKTEDMMKE TMEHRQPEPQ QHDGNNHRII 660 HGLGPVIDRP GIKHSLR

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MQQQQQHGGG GRAGGGGGAA QQFGAQQVEM PPPPFSPAGQ RISAAEAPSP ISSRPPVLHQ  60
LDELGASGAG AGGFDAEGLA AAAAGEEGAS GGSAGSRWPR QETLALLKIR QDMDAAFRDA  120
TLKGPLWEQV SRKLAEQGYN RSAKKCKEKF ENVVKYYKRT KESRAGRNDG KTYRFFTQLE  180
ALHATGSPAS AAPSPATSFA PPSTTVGVSG PLPVRAPAEP PPSVSAGAGA GMLPTMGNVS  240
FSTSNTEDYS DDDDSDDEGT QELGGGADER GKRKRLSEGA AAAGGSGGGK MMRFFEGLMK  300
QVLERQEVMQ QRFLEAIEKR EQDRMIREEA WRRQEMAHLA REQEILAQER AMAASRDAAV  360
LSFIQKITGQ TIPMPSIAAP AINVMPPPAS HPPPQPHPMP AVSAPPSGSH TPPPQPKPSP  420
QPHKSPAPAT PTQQQPSDIV MMPADAPHAD TPGHDGSGGG ASSSRWPKAE VHALIQLRSN  480
LDTRYQDAGP KGPLWEEISA GMRRLGYNRN AKRCKEKWEN INKYFKKVKE SNKKRPEGSK  540
TCPYFHQLDA LYRNKALSSS GRGAAVHAHA SSAPQETVKV TAAAAISQTP PPPSQPSQSS  600
QHAAKTGKGK GGSAASEHGS SGSTNGSVAG AKKTEDMMKE TMEHRQPEPQ QHDGNNHRII  660
HGLGPVIDRP GIKHSLR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	17	GGRAGGGGG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794483.1	0.0	trihelix transcription factor GTL1-like isoform X1
Refseq	XP_025794484.1	0.0	trihelix transcription factor GTL1-like isoform X1
TrEMBL	A0A2S3IKR8	0.0	A0A2S3IKR8_9POAL; Uncharacterized protein
STRING	GRMZM2G414159_P01	0.0	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175