PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03692.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 498aa MW: 54104 Da PI: 7.646 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 252 | 2.2e-77 | 91 | 491 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgd.pmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 +l+c+ +++ g++ +a+a+L+ ls +s +gd ++qR++ f+eAL +r ++ ++l+ +l+ + + + +++ + Zmw_sc03692.1.g00060.1.am.mk 91 IILQCVACLDMGNAVAASAALQYLSSVVSFAGDvALQRVVLAFAEALGRRAMQLLPGLAWSLQLKVLLPPPTPAYINSAQW 171 689*****************************559************************9998776665555555555555 PP GRAS 84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163 f ++P+++++ +aN+aI ea++ e+rvH++D++ ++ QW+aL++ +a+R++gpp lR+T v++ ++ l++ + Zmw_sc03692.1.g00060.1.am.mk 172 sFAMLFPLIRVAATAANNAIKEATAAERRVHVVDLGGANPNQWLALIRLFAARSGGPPFLRLTIVNE----DQSFLSQAAG 248 5******************************************************************....99******** PP GRAS 164 rLakfAeelgvpfefnvl..vakrledleleeLrvkp..gEalaVnlvlqlhrll.........................d 215 L++ A +l+vpf fn++ + +r++ ++ +L v + +Eal++ + lq hrl Zmw_sc03692.1.g00060.1.am.mk 249 VLTQEAVRLHVPFVFNPVqdHIDRFTPASVAALGVAQgrDEALVITSTLQFHRLIadkvtedlpaesrnkkrknvdtttaT 329 *****************8666677777799999999999************************************988644 PP GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 s++++ + d++L+++ +l Pk++v++eq+a+hn++ + +r+ +a++yy +lf lea + + +r +vE++ll++e +n Zmw_sc03692.1.g00060.1.am.mk 330 TSHEIT-KADALLRVLCDLTPKLMVLTEQDANHNDQVLSNRVRNAIDYYEVLFRDLEAA-GGDPMTREFVEHMLLKEEMKN 408 444444.59***********************************************999.7888***************** PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve.....eesgslvlgWkdrpLvsvSa 372 +++cega rrerhe+le W r++ aGF+ +++s++a k++ +l ++ ++dg ++ ++g+l+l+ ++ ++++vSa Zmw_sc03692.1.g00060.1.am.mk 409 IISCEGALRRERHEKLEYWFPRMKVAGFELAAVSDDAFKDVASLAHQLSGDGIKWTlgahkIDKGCLLLYSRKISIFAVSA 489 ****************************************************999877665669***************** PP GRAS 373 Wr 374 W+ Zmw_sc03692.1.g00060.1.am.mk 490 WQ 491 *6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.874 | 62 | 466 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.7E-75 | 91 | 491 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MSSNQSRGSG KAVVAKEEDA EQEIWLVRKK VHHQGGGPSC AGEESSSLSA PAQPAANQGA 60 KAPVEAVPVP DANVPGPQPH GGNLSIFFYN IILQCVACLD MGNAVAASAA LQYLSSVVSF 120 AGDVALQRVV LAFAEALGRR AMQLLPGLAW SLQLKVLLPP PTPAYINSAQ WSFAMLFPLI 180 RVAATAANNA IKEATAAERR VHVVDLGGAN PNQWLALIRL FAARSGGPPF LRLTIVNEDQ 240 SFLSQAAGVL TQEAVRLHVP FVFNPVQDHI DRFTPASVAA LGVAQGRDEA LVITSTLQFH 300 RLIADKVTED LPAESRNKKR KNVDTTTATT SHEITKADAL LRVLCDLTPK LMVLTEQDAN 360 HNDQVLSNRV RNAIDYYEVL FRDLEAAGGD PMTREFVEHM LLKEEMKNII SCEGALRRER 420 HEKLEYWFPR MKVAGFELAA VSDDAFKDVA SLAHQLSGDG IKWTLGAHKI DKGCLLLYSR 480 KISIFAVSAW QPAKKTSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-29 | 94 | 492 | 25 | 380 | Protein SCARECROW |
5b3h_A | 1e-29 | 94 | 492 | 24 | 379 | Protein SCARECROW |
5b3h_D | 1e-29 | 94 | 492 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303827.1 | 1e-118 | scarecrow-like protein 3 | ||||
TrEMBL | K3ZDF1 | 1e-128 | K3ZDF1_SETIT; Uncharacterized protein | ||||
STRING | Si024587m | 1e-128 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13716 | 13 | 30 |