PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03683.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 633aa MW: 69453.4 Da PI: 8.6452

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03683.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.3	4e-14	478	522	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G g+W+ I+r + + Rt+ q+ s+ qky Zmw_sc03683.1.g00040.1.am.mk 478 PWTEEEHKLFLMGLKKYGRGDWRNISRNFVTSRTPTQVASHAQKY 522 8*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.0024	365	417	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	5.993	367	415	IPR017877	Myb-like domain
SuperFamily	SSF46689	1.51E-9	367	422	IPR009057	Homeodomain-like
CDD	cd00167	1.14E-4	369	411	No hit	No description
PROSITE profile	PS51294	17.568	471	527	IPR017930	Myb domain
SuperFamily	SSF46689	3.95E-17	473	527	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-17	474	525	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	5.5E-12	475	521	IPR009057	Homeodomain-like
SMART	SM00717	5.8E-13	475	525	IPR001005	SANT/Myb domain
Pfam	PF00249	1.9E-11	478	522	IPR001005	SANT/Myb domain
CDD	cd00167	9.41E-11	478	523	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 633 aa Download sequence Send to blast
MVELEFFLPF RGLNTDCDAE MMPPRTIRTS ERWQRIGGVQ GAFVHPSGWP CPSSRSATWS 60 GRDGAEAQMS LSSSSFSWGC KSRECRGVIF GCEDGSPGRK ALEIGEVGLR EEADGLLLGR 120 GLPGFPLRSK TSGWLLVRSC DGGIAERPGR KGCALFIWRH LFVAPKSKLL AFGSMPRGGH 180 CCHCAQHRAG VGYRTEAANF EQHGTGLGLD DRLKRDPNPA RVGRNKSSLG GRVVPGATDL 240 MGTRVLGPGR PAQLPLPLRF NDSGESGHVL PRNRQSTPHT TPDHEGDPDS CTRLKLYYHH 300 RLVHKYPFFP SAPTLSPASG LARRTRLPFA PTGKESWMEV LPSPPATRFA AQAAGGWFLQ 360 DRQPVPGVWT LEENKRFERA LASVDWDAPD RWECVASMLP GRTVADVVSH FDDLENDVHF 420 IEAGLMPLPH YGAGDDSQSA AGFTFDWDAG DLGFKRSCYV VGGKRGRGQD QERKKGVPWT 480 EEEHKLFLMG LKKYGRGDWR NISRNFVTSR TPTQVASHAQ KYFIRLNSGG KDKRRSSIHD 540 ITTVNLPDED SSNPSPSPPS VLTATSTPSS GGTVMSEQFG VIMDSKPPPP PMGQHNHFLP 600 HPYGNVKLEP HHGGLFDDSV LMQMQCGQLQ PLG

Sequence ? help Back to Top

Protein Sequence Length: 633 aa Download sequence Send to blast

MVELEFFLPF RGLNTDCDAE MMPPRTIRTS ERWQRIGGVQ GAFVHPSGWP CPSSRSATWS  60
GRDGAEAQMS LSSSSFSWGC KSRECRGVIF GCEDGSPGRK ALEIGEVGLR EEADGLLLGR  120
GLPGFPLRSK TSGWLLVRSC DGGIAERPGR KGCALFIWRH LFVAPKSKLL AFGSMPRGGH  180
CCHCAQHRAG VGYRTEAANF EQHGTGLGLD DRLKRDPNPA RVGRNKSSLG GRVVPGATDL  240
MGTRVLGPGR PAQLPLPLRF NDSGESGHVL PRNRQSTPHT TPDHEGDPDS CTRLKLYYHH  300
RLVHKYPFFP SAPTLSPASG LARRTRLPFA PTGKESWMEV LPSPPATRFA AQAAGGWFLQ  360
DRQPVPGVWT LEENKRFERA LASVDWDAPD RWECVASMLP GRTVADVVSH FDDLENDVHF  420
IEAGLMPLPH YGAGDDSQSA AGFTFDWDAG DLGFKRSCYV VGGKRGRGQD QERKKGVPWT  480
EEEHKLFLMG LKKYGRGDWR NISRNFVTSR TPTQVASHAQ KYFIRLNSGG KDKRRSSIHD  540
ITTVNLPDED SSNPSPSPPS VLTATSTPSS GGTVMSEQFG VIMDSKPPPP PMGQHNHFLP  600
HPYGNVKLEP HHGGLFDDSV LMQMQCGQLQ PLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-13	369	431	11	73	RADIALIS

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2274	37	96