PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03678.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 298aa    MW: 32095.3 Da    PI: 9.9903
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03678.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.88.1e-32119218192
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk++gL
  Zmw_sc03678.1.g00050.1.sm.mk 119 FDKTVTPSDVGKLNRLVIPKQHAEKHfplelpsAGGESKGVLLNFEDAEGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGL 199
                                   89*******************************5556799***************************************** PP

                                   -TT-EEEEEE-SS.SEE.. CS
                            B3  75 kegDfvvFkldgr.sefel 92 
                                   ++gD+v F+++    +++l
  Zmw_sc03678.1.g00050.1.sm.mk 200 NAGDVVGFYRTAAgPDTKL 218
                                   *********7655455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.826141IPR001471AP2/ERF domain
SMARTSM003806.9E-5247IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-12541IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-9541IPR016177DNA-binding domain
CDDcd000182.15E-11841No hitNo description
Gene3DG3DSA:2.40.330.108.3E-40110234IPR015300DNA-binding pseudobarrel domain
CDDcd100175.35E-29117209No hitNo description
SuperFamilySSF1019363.14E-31117213IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.3E-23119225IPR003340B3 DNA binding domain
PROSITE profilePS5086313.606119223IPR003340B3 DNA binding domain
PfamPF023621.7E-28119219IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDSASSLRVW LGTFAGEGDA ARAYDVAAQR FRGRDAVTNF RPLADADPDA AAELRFLASR  60
SKAEVVDMLR KHTYFDELAQ NRRAFASAPT TFSSLAANNH DSSSSSPSPA SAAAREHLFD  120
KTVTPSDVGK LNRLVIPKQH AEKHFPLELP SAGGESKGVL LNFEDAEGKV WRFRYSYWNS  180
SQSYVLTKGW SRFVKEKGLN AGDVVGFYRT AAGPDTKLFI ECKLRPKNGA AVSVAANPVI  240
NVASSAPVTK AVRLFGVDLL TAPAPEAAMG TGCKRARDFA ATPTQAAFKK PLVELALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-521132292117B3 domain-containing transcription factor NGA1
5os9_B2e-521132292117B3 domain-containing transcription factor NGA1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020398137.11e-148AP2/ERF and B3 domain-containing protein Os01g0693400 isoform X2
SwissprotQ8RZX91e-140Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A1D6G2Q71e-143A0A1D6G2Q7_MAIZE; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A3L6DRN21e-143A0A3L6DRN2_MAIZE; AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb02845.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203