PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03657.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 354aa MW: 38082.1 Da PI: 8.4777 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.6e-15 | 39 | 89 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +g W++eEde+l++ + ++G g+W+++++ g + R++k+c++rw +yl Zmw_sc03657.1.g00040.1.am.mk 39 KGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGthwLQRCGKSCRLRWINYL 89 678**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.6 | 3.8e-15 | 95 | 138 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++ +v +++ lG++ W+ Ia++++ gRt++++k++w++ Zmw_sc03657.1.g00040.1.am.mk 95 RGSFSQQEEDAIVGLHEILGNR-WSQIASHLP-GRTDNEIKNFWNS 138 899*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.1E-22 | 34 | 92 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.421 | 34 | 89 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.09E-28 | 37 | 136 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.2E-12 | 38 | 91 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 39 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.30E-11 | 42 | 89 | No hit | No description |
PROSITE profile | PS51294 | 24.517 | 90 | 144 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-25 | 93 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-14 | 94 | 142 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-13 | 95 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-10 | 97 | 137 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
LPSGSQFVRP AVSIERAVAA GMGRQPGSTG GGVQQKLRKG LWSPEEDEKL YNHIIRYGVG 60 CWSSVPKLAG THWLQRCGKS CRLRWINYLR PDLKRGSFSQ QEEDAIVGLH EILGNRWSQI 120 ASHLPGRTDN EIKNFWNSCL KKKLRQRGID PSTHKPISSA NSAAAAASED QKQQAASADG 180 GITANPKQQQ HVFDPFPLTD SFGGGFVDAA LYGHLGGGKD AAGGFVDYSS VLDVSENLGY 240 GESSSNSSNN WNCAPEVNDG DALHWGSENK QGSEHYDPRA RYHEEQMAAR RMQPRAARAR 300 TGSEHLVGLV PPDDRRGGSQ ETHVDSGTNA TAGGGGSGQM GRPFRGAAAP SLLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-27 | 37 | 144 | 5 | 108 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 145 | LKKKLRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150099.1 | 1e-129 | myb-related protein Hv33 | ||||
Swissprot | P20027 | 1e-100 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | B6TL40 | 1e-128 | B6TL40_MAIZE; Myb-related protein Hv33 | ||||
STRING | GRMZM2G003406_P01 | 1e-124 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |