PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03647.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YB

Protein Properties

Length: 591aa MW: 64231.5 Da PI: 8.9624

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03647.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	172.9	3.3e-54	163	258	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvep 82 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefisfvt+easdkc++ekrkt+ngdd++wa++ lGf+dyv+p Zmw_sc03647.1.g00020.1.am.mk 163 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDVCWAFGALGFDDYVDP 243 89***************************************************************************** PP NF-YB 83 lkvylkkyrelegek 97 ++ yl+kyre+eg++ Zmw_sc03647.1.g00020.1.am.mk 244 MRRYLHKYREVEGDR 258 ***********97 PP
2	NF-YB	137.7	3.3e-43	438	529	3	94
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyvepl 83 ++d++lPianv+rimk vlP +akisk aket+qec++efi+fvt+eas++c+re+ ktingdd+++a+ +lG+++y+++l Zmw_sc03647.1.g00020.1.am.mk 438 AHDNLLPIANVGRIMKDVLPPQAKISKRAKETIQECATEFIGFVTGEASERCRRERCKTINGDDICHAMRSLGLDNYADTL 518 6899*************************************************************************** PP NF-YB 84 kvylkkyrele 94 + yl++yre e Zmw_sc03647.1.g00020.1.am.mk 519 RRYLQRYRESE 529 *******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	8.4E-50	159	268	IPR009072	Histone-fold
SuperFamily	SSF47113	1.09E-37	165	269	IPR009072	Histone-fold
Pfam	PF00808	4.1E-26	168	231	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.3E-16	196	214	No hit	No description
PROSITE pattern	PS00685	0	199	215	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.3E-16	215	233	No hit	No description
Gene3D	G3DSA:1.10.20.10	3.0E-39	437	529	IPR009072	Histone-fold
SuperFamily	SSF47113	1.55E-30	440	529	IPR009072	Histone-fold
Pfam	PF00808	1.4E-21	443	506	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.3E-16	508	526	No hit	No description
Gene3D	G3DSA:1.10.20.10	6.8E-4	531	564	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence Send to blast
MWRASAWLQA RVLPRAHQSR SNTTTWMEPG ISLESSAHLP TLSRRPVVCS KAIVSTMESC 60 HPLARSPAGR AEVPGGRHQA GPQPSRSSRS RGDISTAPRT TAASASLMQT QARHYSIFTR 120 ASHLHLPLSH QALIKLAGMA DHHGQEDDDG RRAGGAGAAE EIKEQDRLLP IANVGRIMKQ 180 ILPPNAKISK EAKETMQECV SEFISFVTGE ASDKCHKEKR KTVNGDDVCW AFGALGFDDY 240 VDPMRRYLHK YREVEGDRAA AAAASRGAGG PPDHPASXXX XDPAAPVISC SAPWTGAITP 300 ALAPGIISIK ALDAIQRQRT APSPRDSVTS HSQPRAYLAL LNPPGLYYCA FARELSSSAV 360 VSTLIRLDPR PRAVALDAII VAMRGPHGLS ADVARLGHPS ITPSPPQEKN AASLAAPARA 420 SSSASTEVDG GGGGMNSAHD NLLPIANVGR IMKDVLPPQA KISKRAKETI QECATEFIGF 480 VTGEASERCR RERCKTINGD DICHAMRSLG LDNYADTLRR YLQRYRESEE FAMRSLGLDN 540 YADTMRRYLQ RYRESEELAA AINSSSGREI QIDVRDELSI FRGSEQRQDK N

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence Send to blast

MWRASAWLQA RVLPRAHQSR SNTTTWMEPG ISLESSAHLP TLSRRPVVCS KAIVSTMESC  60
HPLARSPAGR AEVPGGRHQA GPQPSRSSRS RGDISTAPRT TAASASLMQT QARHYSIFTR  120
ASHLHLPLSH QALIKLAGMA DHHGQEDDDG RRAGGAGAAE EIKEQDRLLP IANVGRIMKQ  180
ILPPNAKISK EAKETMQECV SEFISFVTGE ASDKCHKEKR KTVNGDDVCW AFGALGFDDY  240
VDPMRRYLHK YREVEGDRAA AAAASRGAGG PPDHPASXXX XDPAAPVISC SAPWTGAITP  300
ALAPGIISIK ALDAIQRQRT APSPRDSVTS HSQPRAYLAL LNPPGLYYCA FARELSSSAV  360
VSTLIRLDPR PRAVALDAII VAMRGPHGLS ADVARLGHPS ITPSPPQEKN AASLAAPARA  420
SSSASTEVDG GGGGMNSAHD NLLPIANVGR IMKDVLPPQA KISKRAKETI QECATEFIGF  480
VTGEASERCR RERCKTINGD DICHAMRSLG LDNYADTLRR YLQRYRESEE FAMRSLGLDN  540
YADTMRRYLQ RYRESEELAA AINSSSGREI QIDVRDELSI FRGSEQRQDK N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-39	157	527	1	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2917	38	87