PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03641.1.g00050.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 235aa MW: 26243.1 Da PI: 5.0404

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03641.1.g00050.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	49	102	4	56
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Zmw_sc03641.1.g00050.1.sm.mkhc 49 KRRFTEEQVRSLETTFHArRAKLEPKEKAELARELGLQPRQVAIWFQNKRARWR 102 458************8899******************************9 PP
2	HD-ZIP_I/II	119.6	1.6e-38	47	140	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeene 78 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal++ e Zmw_sc03641.1.g00050.1.sm.mkhc 47 ERKRRFTEEQVRSLETTFHARRaKLEPKEKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYADLRARYDALRDLVE 125 69***************9999**************************************************** PP HD-ZIP_I/II 79 rLekeveeLreelke 93 +L++e+ +L+++l+e Zmw_sc03641.1.g00050.1.sm.mkhc 126 SLKQEKVALAAQLDE 140 ********99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.36E-18	32	106	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	43	104	IPR001356	Homeobox domain
SMART	SM00389	2.5E-17	46	108	IPR001356	Homeobox domain
Pfam	PF00046	6.8E-16	49	102	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.8E-19	49	110	IPR009057	Homeodomain-like
CDD	cd00086	8.44E-16	52	105	No hit	No description
PRINTS	PR00031	5.5E-7	75	84	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	79	102	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.5E-7	84	100	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.7E-12	104	145	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MERDCQFLVP PPPQHQYEDQ LLHQLMMVGD QDPVGAAGMR GGGGGGERKR RFTEEQVRSL 60 ETTFHARRAK LEPKEKAELA RELGLQPRQV AIWFQNKRAR WRSKQLEHDY ADLRARYDAL 120 RDLVESLKQE KVALAAQLDE LKGRLNERQD QSGSSCNITG GTASFDVDDK RNNNSSVSSQ 180 NDGAMAAAVA TSEDSTAAGY YDDHAVAYGG GLPDPFCNPP ELWDTWPLLE WNAVA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: In leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151825.1	1e-101	homeobox-leucine zipper protein ATHB-6
Swissprot	A2X7U1	5e-85	HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBL	A0A1E5W7L4	1e-103	A0A1E5W7L4_9POAL; Homeobox-leucine zipper protein HOX24
STRING	GRMZM2G117164_P01	1e-101	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4027	31	75