PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03633.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 384aa MW: 41132.6 Da PI: 6.7416

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03633.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	104	178	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC.......................TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkas....................kapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P+a+ + + + a+i+ A+e++k+L+ Zmw_sc03633.1.g00020.1.am.mk 104 QRMTHIAVERNRRRQMNEYLAVLRSLMPEAYvqrvrsytpspyfpfyqtdtNHFRLRGDQASIVGGAIEFVKELE 178 79*************************877************99988888888999999999999999985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.96E-14	102	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.33E-11	102	182	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.3E-13	102	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.986	103	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-9	104	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-8	109	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MSALVDTLCA PSSDAALIYD TLNAASAANF LFDVNAAAAF CVDGGVALGA APVQQHAVSA 60 PGAGAAVAVA VAAPGDVDAT SSAPRRKRRR RARSCKSMEE AESQRMTHIA VERNRRRQMN 120 EYLAVLRSLM PEAYVQRVRS YTPSPYFPFY QTDTNHFRLR GDQASIVGGA IEFVKELEQH 180 LQSLEAQKRT LVHQRQHYTA KPDTTATPFH SAAATPTTCA VAAVDSTTTT ATSNCSSSVT 240 EDTCSDAPPF ARFFVRPQYV WCHHSPREST MTMLPAEDGG GRPGVADIEV SLVEMHASVR 300 VMAPRRPGQL LGMVTGLQAL RLTVLHLTVT TLDALALYSL SLKVEEECGL TTVDDIAAAV 360 HHVLCIIDAD AATQQMLALG AVGH

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MSALVDTLCA PSSDAALIYD TLNAASAANF LFDVNAAAAF CVDGGVALGA APVQQHAVSA  60
PGAGAAVAVA VAAPGDVDAT SSAPRRKRRR RARSCKSMEE AESQRMTHIA VERNRRRQMN  120
EYLAVLRSLM PEAYVQRVRS YTPSPYFPFY QTDTNHFRLR GDQASIVGGA IEFVKELEQH  180
LQSLEAQKRT LVHQRQHYTA KPDTTATPFH SAAATPTTCA VAAVDSTTTT ATSNCSSSVT  240
EDTCSDAPPF ARFFVRPQYV WCHHSPREST MTMLPAEDGG GRPGVADIEV SLVEMHASVR  300
VMAPRRPGQL LGMVTGLQAL RLTVLHLTVT TLDALALYSL SLKVEEECGL TTVDDIAAAV  360
HHVLCIIDAD AATQQMLALG AVGH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	90	RRKRRRR
2	85	89	RKRRR
3	85	92	RKRRRRAR
4	104	115	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004953510.1	1e-126	transcription factor bHLH94
TrEMBL	A0A0A9CH21	1e-131	A0A0A9CH21_ARUDO; Uncharacterized protein
STRING	Pavir.Ab02502.1.p	1e-125	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78