PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03577.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 292aa MW: 32496.3 Da PI: 4.2715

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03577.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.8	5e-10	227	277	3	53
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 R +++k qle+Le+++ +++ p+ +++ + + ++L+ + + WF rR Zmw_sc03577.1.g00070.1.sm.mkhc 227 ARKRLKKVQLETLERVYLRSKRPTNTMISSIVQVTNLPRKTIVKWFEDRRE 277 58999********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	10.236	222	278	IPR001356	Homeobox domain
SMART	SM00389	6.8E-4	224	286	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-10	225	279	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-9	225	277	IPR009057	Homeodomain-like
CDD	cd00086	1.83E-9	225	276	No hit	No description
Pfam	PF00046	1.3E-7	227	277	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MATVLLPLAT PVSSAAPRTS ISSAPWPAPF LGTRAHLGLR LRDSPRGVAC ALRRRPTKYK 60 NEDVAAEDEM DNEDEDNALE AIFKQLEEDL ENDDLSVDND EDEISEEDMA MFEQELSEAI 120 GDIGGAEESA GDLFSGFGES GSDENIKNLA AELGLDRALV IELLRNPPPK LLLMSDSLPD 180 EAPSKPEVKD AEPSSSAIVD RAEASHATEI KPETELPIHI RSAEWSARKR LKKVQLETLE 240 RVYLRSKRPT NTMISSIVQV TNLPRKTIVK WFEDRREQDG LFSSDMFAMN WY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	234	ARKRLKKVQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811667.1	1e-115	protein OVEREXPRESSOR OF CATIONIC PEROXIDASE 3
TrEMBL	A0A0A9IZX9	1e-122	A0A0A9IZX9_ARUDO; Uncharacterized protein
STRING	Si006856m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10700	35	42