PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03565.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 374aa MW: 40130 Da PI: 9.9424 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.6e-19 | 91 | 136 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + Zmw_sc03565.1.g00060.1.am.mk 91 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 136 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 143 | 186 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eEd +++a ++lG++ W++Iar ++ gRt++ +k++w++ Zmw_sc03565.1.g00060.1.am.mk 143 RRPFTPEEDATILRARTELGNR-WAAIARLLP-GRTDNAVKNHWNS 186 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.481 | 86 | 141 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-31 | 88 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-17 | 90 | 139 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-18 | 91 | 136 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-25 | 92 | 144 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.02E-15 | 93 | 135 | No hit | No description |
SMART | SM00717 | 7.3E-15 | 142 | 190 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 143 | 186 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.722 | 143 | 192 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.4E-23 | 145 | 192 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.87E-11 | 145 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MPSGAANTTR PTSGEVAPRQ LYPVAEQPAA PGHSAHRSGY ISPRLDLPFH LATDRDVPIE 60 LITHSTITAA AVADLQLGKD QITEAECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG 120 IPGRSGKSCR LRWCNQLSPQ VERRPFTPEE DATILRARTE LGNRWAAIAR LLPGRTDNAV 180 KNHWNSSLKR KVVATATTDA AAERPCKRVS PAPGSPTGSD RSELSHGSVG CGGAQVYRPV 240 PRPGGFDTIR SANVRPTPSA PTSGRGEDPL TSLSLSLPGQ DQQGSSGFRH DSVRSHFQEL 300 SPSRSPSPQP SHYPFSGELV AAMQDMIRAE VRKYMSGVGL RAGCGPGAAG EKSIVEGVMR 360 AAAERVGVVT SRQF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-39 | 88 | 192 | 4 | 108 | B-MYB |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001147631.1 | 1e-143 | uncharacterized protein LOC100281240 | ||||
Swissprot | Q9FDW1 | 4e-69 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | A0A3L6RS06 | 1e-143 | A0A3L6RS06_PANMI; Uncharacterized protein | ||||
STRING | GRMZM2G145444_P01 | 1e-142 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |