PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03543.1.g00090.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 450aa MW: 48606.7 Da PI: 6.7889

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03543.1.g00090.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.5	2e-30	238	293	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k r++W+peLH++Fv a+++LGG+++A Pk+i+elmkv+gLt+++vkSHLQkYRl+ Zmw_sc03543.1.g00090.1.am.mk 238 KSRRCWSPELHRQFVAALNKLGGPQVANPKQIRELMKVEGLTNDEVKSHLQKYRLH 293 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.021	235	295	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.4E-28	236	296	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.87E-16	236	296	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	238	293	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	240	291	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MGLDVGEIGM GADLSLDLRH FASKAMKQTR SAQASDMDAY IRRLEEERGK IEVFRRELPI 60 CARLLVDVID VMKEEAEKEK NDHKEEEEED GAAGDKSKWM STAQLWTSGS GREAAEPEKQ 120 ESDKGRSSSE QKSFSGGALT LFNAVASGAP SSRQRPRLRN NDDKAVDVEM PDLSLLSPPP 180 ITSVPAAAAD ESRRLVVGLA TAAARACGMV PSAGGPTLCF PPQVKQTTPQ QQQQQARKSR 240 RCWSPELHRQ FVAALNKLGG PQVANPKQIR ELMKVEGLTN DEVKSHLQKY RLHTRRTPSG 300 PAVVSQPIVL VGGLWIPHQE HSQSGSQSQS SGSPQGPLHF SPASGVAPAS CEEEASAAGF 360 GQSYSFRPEK LSYTTVDFSR LIERRRAMLA CVLLVGSGLH EICLLEAATG RFGVGLGLGT 420 ATNATSPLQP PQALDFWELD PSPPTGYYAG

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MGLDVGEIGM GADLSLDLRH FASKAMKQTR SAQASDMDAY IRRLEEERGK IEVFRRELPI  60
CARLLVDVID VMKEEAEKEK NDHKEEEEED GAAGDKSKWM STAQLWTSGS GREAAEPEKQ  120
ESDKGRSSSE QKSFSGGALT LFNAVASGAP SSRQRPRLRN NDDKAVDVEM PDLSLLSPPP  180
ITSVPAAAAD ESRRLVVGLA TAAARACGMV PSAGGPTLCF PPQVKQTTPQ QQQQQARKSR  240
RCWSPELHRQ FVAALNKLGG PQVANPKQIR ELMKVEGLTN DEVKSHLQKY RLHTRRTPSG  300
PAVVSQPIVL VGGLWIPHQE HSQSGSQSQS SGSPQGPLHF SPASGVAPAS CEEEASAAGF  360
GQSYSFRPEK LSYTTVDFSR LIERRRAMLA CVLLVGSGLH EICLLEAATG RFGVGLGLGT  420
ATNATSPLQP PQALDFWELD PSPPTGYYAG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-14	238	291	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002459272.2	1e-128	transcription factor HHO2
Refseq	XP_025804519.1	1e-128	transcription factor NIGTH1-like
TrEMBL	A0A0A9H211	1e-132	A0A0A9H211_ARUDO; Uncharacterized protein
STRING	Sb02g001600.1	1e-128	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107