PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03543.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 349aa MW: 35868.8 Da PI: 9.2816

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03543.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.5e-38	55	111	3	59
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++ l+cprC+s+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk + Zmw_sc03543.1.g00030.1.am.mk 55 QAPLRCPRCNSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKPR 111 66789**************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.4E-32	57	111	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-24	58	107	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.096	58	112	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	60	96	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MDQLKSVNDG NPTPLPMLLH PVVSNPSPTS SSSTSSRSST SSPKGQGQGQ GAAEQAPLRC 60 PRCNSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKP RPMPMPAAKP 120 AISCKAGGVG PQLGLGVGMG MGGASPVPWA SSQQAAAAQL MALLNSARNV QGHGGSNVHR 180 LLGLDTMGHL PLHVLPGGPG AGNVAGVPAS LWPLSAPRQV PATPAHMDSQ LGMSPLGHHD 240 MLSNLGIKLP PSSASPAPSY YSDQLHAVMS NAGHPHEYDV ASTTSLPCTT AVTSLPPAIS 300 SVSAALSSAT AGLDLPPVSL SAPEMQYWTG PAAMSVAWPD LTTPNGAFP

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MDQLKSVNDG NPTPLPMLLH PVVSNPSPTS SSSTSSRSST SSPKGQGQGQ GAAEQAPLRC  60
PRCNSSNTKF CYYNNYNLTQ PRHFCKTCRR YWTKGGALRN VPIGGGCRKP RPMPMPAAKP  120
AISCKAGGVG PQLGLGVGMG MGGASPVPWA SSQQAAAAQL MALLNSARNV QGHGGSNVHR  180
LLGLDTMGHL PLHVLPGGPG AGNVAGVPAS LWPLSAPRQV PATPAHMDSQ LGMSPLGHHD  240
MLSNLGIKLP PSSASPAPSY YSDQLHAVMS NAGHPHEYDV ASTTSLPCTT AVTSLPPAIS  300
SVSAALSSAT AGLDLPPVSL SAPEMQYWTG PAAMSVAWPD LTTPNGAFP

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981654.1	1e-147	dof zinc finger protein 4
TrEMBL	A0A368SE80	1e-145	A0A368SE80_SETIT; Uncharacterized protein
TrEMBL	K4ALA5	1e-145	K4ALA5_SETIT; Uncharacterized protein
STRING	Si039685m	1e-146	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44