PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03530.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 306aa MW: 33603.8 Da PI: 4.7601

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03530.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.9	9.6e-20	64	117	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ +eq+++Le++Fe +++++ ++++ +A+ lgL+ rqV vWFqNrRa++k Zmw_sc03530.1.g00010.1.sm.mkhc 64 KKRRLAQEQVRALERCFETDNKLDPDRKACIARDLGLQPRQVAVWFQNRRARWK 117 456899***********************************************9 PP
2	HD-ZIP_I/II	127.6	5.3e-41	63	155	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeener 79 ekkrrl++eqv++LE++Fe+++kL+p+rK+ +ar+LglqprqvavWFqnrRAR+ktk+lE+d++aL++++dal+++ ++ Zmw_sc03530.1.g00010.1.sm.mkhc 63 EKKRRLAQEQVRALERCFETDNKLDPDRKACIARDLGLQPRQVAVWFQNRRARWKTKHLERDFAALRARHDALRADCDA 141 69*************************************************************************** PP HD-ZIP_I/II 80 LekeveeLreelke 93 L++++++L++e++e Zmw_sc03530.1.g00010.1.sm.mkhc 142 LRRDKDALAAEIRE 155 *******99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.25E-18	56	120	IPR009057	Homeodomain-like
SMART	SM00389	2.8E-18	62	123	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.115	63	119	IPR001356	Homeobox domain
Pfam	PF00046	6.0E-17	64	117	IPR001356	Homeobox domain
CDD	cd00086	4.01E-16	64	120	No hit	No description
Gene3D	G3DSA:1.10.10.60	5.1E-20	70	118	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	94	117	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.2E-14	119	160	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MKRQSKQRLT SSHESTGTGE DLAFAEEENL TARNMEREET EMEDVDEDDD EPARGRSTCG 60 LGEKKRRLAQ EQVRALERCF ETDNKLDPDR KACIARDLGL QPRQVAVWFQ NRRARWKTKH 120 LERDFAALRA RHDALRADCD ALRRDKDALA AEIRELRQKL SNPEPTVKVE ATGNDAAEDR 180 QGTVGASARA VYKDGSSDSD SSVVFNDVEA SPYSGAVFEQ PPQSGGFVGF GGSLIDSAAA 240 TMACSFLPPF GTNWHHGSAT YPCHPYKGGG DSFGLTEEWL AGSDVISSDG VAGFFADDHA 300 SSFNFS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798128.1	1e-124	homeobox-leucine zipper protein HOX13-like
Swissprot	Q10QP3	5e-89	HOX13_ORYSJ; Homeobox-leucine zipper protein HOX13
TrEMBL	A0A0A9PIJ1	1e-136	A0A0A9PIJ1_ARUDO; Uncharacterized protein
STRING	Pavir.Ia04906.1.p	1e-127	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]