PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03527.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21134.2 Da PI: 9.451 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100 | 9.2e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyeys+ Zmw_sc03527.1.g00080.1.sm.mk 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIIFSTKGKLYEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 26.5 | 2.6e-10 | 63 | 113 | 37 | 99 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 hl+Ge+Le+L+lkeLqqLeqq ++l+le+i+elq+kek+lqeenk L+k+l Zmw_sc03527.1.g00080.1.sm.mk 63 HLMGEELETLKLKELQQLEQQ------------SQLMLESISELQRKEKSLQEENKVLQKELV 113 9******************97............89************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 6.6E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.165 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.99E-39 | 2 | 61 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-30 | 2 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.349 | 40 | 129 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MGRGKVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIIFST KGKLYEYSTD 60 SWHLMGEELE TLKLKELQQL EQQSQLMLES ISELQRKEKS LQEENKVLQK ELVEKQKAQK 120 QQVQWEHGQQ PQTSSSSSTF KTREAPPTVN ISTYPVAAGV RVDGAPERPE VCFGLPPWMM 180 SHLNG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 60 | 1 | 61 | MEF2C |
5f28_B | 1e-20 | 1 | 60 | 1 | 61 | MEF2C |
5f28_C | 1e-20 | 1 | 60 | 1 | 61 | MEF2C |
5f28_D | 1e-20 | 1 | 60 | 1 | 61 | MEF2C |
6byy_A | 1e-20 | 1 | 60 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 1e-20 | 1 | 60 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 1e-20 | 1 | 60 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 1e-20 | 1 | 60 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 1e-20 | 1 | 60 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 1 | 60 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 1 | 60 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 1 | 60 | 1 | 61 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. May be involved in the control of flowering time. {ECO:0000269|Ref.9}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004981740.1 | 5e-77 | MADS-box transcription factor 14 isoform X1 | ||||
Swissprot | Q10CQ1 | 3e-72 | MAD14_ORYSJ; MADS-box transcription factor 14 | ||||
TrEMBL | A0A0A9QQM8 | 1e-85 | A0A0A9QQM8_ARUDO; Uncharacterized protein | ||||
STRING | BRADI1G08340.1 | 2e-73 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1151 | 37 | 113 |