PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03526.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 256aa MW: 29017.5 Da PI: 10.6246 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.3 | 4.9e-29 | 97 | 147 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqv+fskRrng+lKKA+ELSvLCdaeva+++fs++gklye++s Zmw_sc03526.1.g00070.1.sm.mkhc 97 KRIENPTSRQVSFSKRRNGLLKKAFELSVLCDAEVALVVFSTRGKLYEFAS 147 79***********************************************86 PP | |||||||
2 | K-box | 55.9 | 1.8e-19 | 150 | 212 | 37 | 99 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +llGe Le++s++eL++Le +Leksl+ +R +K++ll eq+++l++ke l+++n++Lr+k + Zmw_sc03526.1.g00070.1.sm.mkhc 150 KLLGERLEECSIEELHSLEVKLEKSLRIVRGRKTQLLEEQVRKLKEKEMTLRKNNEDLREKCK 212 79**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.16 | 89 | 149 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.5E-37 | 89 | 148 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-30 | 91 | 111 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.94E-35 | 91 | 147 | No hit | No description |
SuperFamily | SSF55455 | 2.62E-27 | 91 | 149 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-25 | 98 | 145 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.58 | 100 | 217 | IPR002487 | Transcription factor, K-box |
PRINTS | PR00404 | 2.7E-30 | 111 | 126 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.7E-30 | 126 | 147 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-18 | 150 | 212 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MARALPEKRP MSCSHNLPRM GNSGLTYPFP FFIWVPMKHR QRATPTTNGS PPSSVSSSAW 60 LPPKLRHHPL SKPRQDSSIS LRTCDRSEMV RGKTQLKRIE NPTSRQVSFS KRRNGLLKKA 120 FELSVLCDAE VALVVFSTRG KLYEFASAGK LLGERLEECS IEELHSLEVK LEKSLRIVRG 180 RKTQLLEEQV RKLKEKEMTL RKNNEDLREK CKDQPLLVAP AAVDFTDVET ELYIGLPGRD 240 NRPNKAAIAV SQSNRA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-16 | 89 | 148 | 1 | 60 | MEF2C |
5f28_B | 1e-16 | 89 | 148 | 1 | 60 | MEF2C |
5f28_C | 1e-16 | 89 | 148 | 1 | 60 | MEF2C |
5f28_D | 1e-16 | 89 | 148 | 1 | 60 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004985919.1 | 2e-76 | MADS-box transcription factor 50 isoform X2 | ||||
Refseq | XP_004985920.1 | 2e-76 | MADS-box transcription factor 50 isoform X2 | ||||
Refseq | XP_012698462.1 | 2e-76 | MADS-box transcription factor 50 isoform X2 | ||||
Swissprot | Q9XJ60 | 2e-72 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A1D6PKX0 | 8e-76 | A0A1D6PKX0_MAIZE; MADS1 | ||||
STRING | GRMZM2G171365_P01 | 4e-74 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1413 | 33 | 79 |