PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03521.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 236aa    MW: 25217.1 Da    PI: 4.651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03521.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1763112255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+ +++g
  Zmw_sc03521.1.g00080.1.am.mk  63 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFHDPEMAARAHDVAAIAIKG 112
                                   69****998.**********843...6**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.2663120IPR001471AP2/ERF domain
PfamPF008474.4E-1063112IPR001471AP2/ERF domain
SMARTSM003807.8E-3663126IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2163121IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3163121IPR001471AP2/ERF domain
PRINTSPR003673.4E-96475IPR001471AP2/ERF domain
CDDcd000183.30E-3164121No hitNo description
PRINTSPR003673.4E-986102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MEQEQASSLA DQAVSDGGTC SGNSSSSDSL MNASSPTSSG DDAGSVTASG GKKRPRRDLK  60
HPTYRGVRMR AWGKWVSEIR EPRKKSRIWL GTFHDPEMAA RAHDVAAIAI KGRNAHLNFP  120
EXXXXASAAP RDVQAAAALA AATVASPDPA PRCHDEEELL ARGQATPECD VVSNAAPFGG  180
DMGLLDCTFL DVPDALLDFG HMFSPPPPLP SCCGSPWDDI IADDFCFEEP LLLWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-15601281180Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164544.12e-68ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP38e-36ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A060D2112e-67A0A060D211_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G028969_P014e-68(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]