PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03507.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 243aa MW: 26016.6 Da PI: 9.4659 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.2 | 9.3e-34 | 18 | 72 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFveav++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYR+ Zmw_sc03507.1.g00050.1.sm.mkhc 18 KPRLRWTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRM 72 79****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.206 | 15 | 75 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-32 | 16 | 73 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-24 | 18 | 73 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.08E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.8E-10 | 20 | 71 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 3.2E-10 | 113 | 137 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MERAGCGAAA AAMGGDPKPR LRWTPDLHER FVEAVTKLGG PDKATPKSVL RLMGMKGLTL 60 YHLKSHLQKY RMGKQNKKDS GLEASRGGIA AQGINFSVPA PPSIPSSASN NTVQKKLQMR 120 IEAEGKYLQT ILEKAQSNLS YDASGAANLE ASRSQLTDFN LALSCFVDNV TQVSEQNSGE 180 LVKAMSADSL RTSSLGFQLC HGVQNVEAAK CPPDDGLLLL DLNIRGGHGH PSLPDLKINR 240 HTG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-22 | 18 | 74 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-22 | 18 | 74 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-22 | 18 | 74 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-22 | 18 | 74 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025808925.1 | 1e-132 | myb family transcription factor PHL11-like | ||||
Swissprot | C0SVS4 | 2e-52 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | A0A2S3GSU5 | 1e-130 | A0A2S3GSU5_9POAL; Uncharacterized protein | ||||
STRING | Si018049m | 1e-130 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3940 | 34 | 70 |
Publications ? help Back to Top | |||
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