PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03492.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C2H2
Protein Properties Length: 564aa    MW: 60270 Da    PI: 10.0615
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03492.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.82.1e-066991123
                                  EEETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                                  y+C++Cg+ F r  nL+ H r+H
  Zmw_sc03492.1.g00020.1.am.mk 69 YVCEICGQGFQRDQNLQMHRRRH 91
                                  9*********************9 PP
2zf-C2H211.40.00098148169223
                                   EETTTTEEESSHHHHHHHHHHT CS
                       zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                                    C  C+k +  +s++k H++t+
  Zmw_sc03492.1.g00020.1.am.mk 148 ACARCSKAYAVHSDYKAHLKTC 169
                                   6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.2E-56891IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.61E-56891No hitNo description
SMARTSM003550.00326991IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.6356991IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.61E-5142167No hitNo description
SMARTSM00355230147174IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MLSSCAPTTA MPHPEPAVAG TPEQFRSLQI ATAGAAGGAK KKRRPAGTPD PDAEVVSLSP  60
RTLLESDRYV CEICGQGFQR DQNLQMHRRR HKVPWKLLKR EAGEAARKRV FVCPEPSCLH  120
HDPAHALGDL VGIKKHFRRK HSGHRQWACA RCSKAYAVHS DYKAHLKTCG TRGHTCDCGR  180
VFSRPFMSSS IYSPRSLLAS VVKRDGKGQA QFPRASAAAA TPLGSCGRAI ERNQTARKLM  240
SLTRIAKPLI ASLASSFLAL AGERPAGRLE SWIPVPAIAW RCVACDREEQ SADERAHTIQ  300
PRHHFTTLVF HSFHSTLRTQ ARLVESFIEH QDTCNASRPA RAEAASTSSP ASGGGNGGGG  360
LGVTAASSSQ QQQSRQVHAA AAMSRTTSSA SPSSGGDLVV SAGASPAVTA MASSSTANVA  420
GFHRFDPPAP SVERRRPGVH NLELQLMPPR EDGAALPGFG YFASAPHSPS VPPRRGAEHP  480
TRLQLSIGVE LGRAHALRDH AVRQVDATLM QVTCYSCRGK FRARAGAVST EVASYVSSVV  540
TEGGDAEVDN DDDGLPSHGK MDMN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-13143184344Zinc finger protein JACKDAW
5b3h_F4e-13143184344Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13943KKKRR
23944KKKRRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444487.11e-116protein indeterminate-domain 14
TrEMBLC5YM721e-115C5YM72_SORBI; Uncharacterized protein
STRINGSb07g022700.11e-115(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105138124