PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc03453.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 369aa MW: 40719 Da PI: 4.5014 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 6.2e-19 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg++ ++eeAa+a++a +++++g Zmw_sc03453.1.g00080.1.sm.mkhc 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDAEARRIRG 164 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.11E-31 | 115 | 174 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-31 | 115 | 173 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.709 | 115 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 115 | 173 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.7E-36 | 115 | 178 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 116 | 127 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.0E-12 | 116 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-10 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 369 aa Download sequence Send to blast |
MCGGAILTNL TAHPEPRRRL TEGALWPEKK KPKRGGGRRG FVEEDDADFE ADFEEFEVDF 60 GESDLELGQG EDDDVVEIKP FAAKRNFSGD GLSTMTTASF DGPAARSAKR KRKNQYRGIR 120 QRPWGKWAAE IRDPRKGVRV WLGTYNSPEE AARAYDAEAR RIRGKKAKVN FPDTPNVAQK 180 RRANPAAVRA PKSSFEQKPT VIAAVNNPIN TNGSFYPSAD YNPNKQVVQL DNMTFSPSIN 240 TPAPMEDPIM NLHSDQGSNS FGCSDLGWEN DTKTPDITSI TPISTIAEGD ESEFVNSNSN 300 SSLVPPIMDN NSVDLTDGLT DLESYMRFLL DGGASESIDS LLNLDGSQDV VSNMDLWSFD 360 DMPITGDFY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-19 | 115 | 178 | 14 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816350.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-167 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A1E5WBP2 | 0.0 | A0A1E5WBP2_9POAL; Ethylene-responsive transcription factor 1 | ||||
STRING | Pavir.Aa00281.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |