PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03442.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 352aa    MW: 38418.4 Da    PI: 9.4516
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03442.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.63.6e-51672011128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78 
                                   lppGfrFhP+d+elv++yL++k++gk          + +vd++k+ePwdLp ++  + +ewyfFs +d+kyatg+r+nrat
  Zmw_sc03442.1.g00140.1.am.mk  67 LPPGFRFHPRDDELVMDYLCRKLSGKGgggAYGGINMIDVDLNKCEPWDLPDEACVGGREWYFFSLHDRKYATGQRTNRAT 147
                                   79************************97753332458899***********7666789*********************** PP

                           NAM  79 ksgyWkatgkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +sgyWkatgkd+++ ++    +g++vg++ktLvfy+grap+g+ktdWvmhe+ +
  Zmw_sc03442.1.g00140.1.am.mk 148 RSGYWKATGKDRPISRRrgsgSGAVVGMRKTLVFYRGRAPRGSKTDWVMHEFCV 201
                                   ***************9988777778***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-5656232IPR003441NAC domain
PROSITE profilePS5100555.0367232IPR003441NAC domain
PfamPF023652.1E-2568200IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MRRSWREACA AISDQSSVTA TATRRWWLGG AVPSLTQSSQ RVSLLKPRKK KKRARAMSSI  60
SLVEARLPPG FRFHPRDDEL VMDYLCRKLS GKGGGGAYGG INMIDVDLNK CEPWDLPDEA  120
CVGGREWYFF SLHDRKYATG QRTNRATRSG YWKATGKDRP ISRRRGSGSG AVVGMRKTLV  180
FYRGRAPRGS KTDWVMHEFC VEGPAVADAG GVAGRPGSPL KEDWVLCRVF YRGRTATADV  240
EAEAGSLPNE LISLPMPHAP LADAYLLALD HAPAATIGGF YYQQDDDADG GLAATQAKSL  300
SSFRELLTGM VERDGGAAEK VELHQDWTEA AYAAGQQSAA PAQTWNPFLN SG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-476223612169NO APICAL MERISTEM PROTEIN
1ut4_B1e-476223612169NO APICAL MERISTEM PROTEIN
1ut7_A1e-476223612169NO APICAL MERISTEM PROTEIN
1ut7_B1e-476223612169NO APICAL MERISTEM PROTEIN
3swm_A1e-476223615172NAC domain-containing protein 19
3swm_B1e-476223615172NAC domain-containing protein 19
3swm_C1e-476223615172NAC domain-containing protein 19
3swm_D1e-476223615172NAC domain-containing protein 19
3swp_A1e-476223615172NAC domain-containing protein 19
3swp_B1e-476223615172NAC domain-containing protein 19
3swp_C1e-476223615172NAC domain-containing protein 19
3swp_D1e-476223615172NAC domain-containing protein 19
3ulx_A1e-476423012166Stress-induced transcription factor NAC1
4dul_A1e-476223612169NAC domain-containing protein 19
4dul_B1e-476223612169NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14752RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824710.11e-132NAC domain-containing protein 21/22-like
SwissprotQ84TE64e-72NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2S3IAF01e-131A0A2S3IAF0_9POAL; Uncharacterized protein
STRINGSi010680m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]