PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03436.1.g00110.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 376aa MW: 39484.1 Da PI: 5.8819

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03436.1.g00110.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	26.8	1.1e-08	190	248	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 k+++r + NR +A rs +RK +i eLe+kv+ ++ e +aL +l l+ a l +e+ Zmw_sc03436.1.g00110.1.sm.mk 190 KKAKRIINNRQSAARSKERKTRYISELERKVQFMQREATALSTQLALLQRDTAGLSAEN 248 89*******************************************99999888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.0E-13	186	250	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.691	188	251	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.3E-10	190	245	No hit	No description
SuperFamily	SSF57959	4.22E-10	190	244	No hit	No description
Pfam	PF00170	7.7E-8	190	246	IPR004827	Basic-leucine zipper domain
CDD	cd14703	9.35E-22	191	242	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MDQSPIAEGG NGRDAAGVGG GGNGLSLQPS PGAATPSSPT PRTECDMSRM PDSPMRKPGH 60 RRALSDMIGL PDDLDLGEPG DGPSLSSDEN EEELFSMFIN VDKLNSPGGA SESESSCAVT 120 GGGGEGTPMS AAPGAGVKPR HQHSHSMDAS SSVPAEQLFG TLAVEGMSSA EAKKAMSAAK 180 LAELALIDPK KAKRIINNRQ SAARSKERKT RYISELERKV QFMQREATAL STQLALLQRD 240 TAGLSAENSE LKIRLQNTEH QVHLQDALND ALKSELQRLK FATGQMGNGG GGMMSFGGPF 300 GGNQPLMFHA NQQAMPPPFL AMQQQQLPNP GPLHPLQAQQ LQQQQATLGL SMRGPVAAAP 360 GSQLSWAEAW SESSSG

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MDQSPIAEGG NGRDAAGVGG GGNGLSLQPS PGAATPSSPT PRTECDMSRM PDSPMRKPGH  60
RRALSDMIGL PDDLDLGEPG DGPSLSSDEN EEELFSMFIN VDKLNSPGGA SESESSCAVT  120
GGGGEGTPMS AAPGAGVKPR HQHSHSMDAS SSVPAEQLFG TLAVEGMSSA EAKKAMSAAK  180
LAELALIDPK KAKRIINNRQ SAARSKERKT RYISELERKV QFMQREATAL STQLALLQRD  240
TAGLSAENSE LKIRLQNTEH QVHLQDALND ALKSELQRLK FATGQMGNGG GGMMSFGGPF  300
GGNQPLMFHA NQQAMPPPFL AMQQQQLPNP GPLHPLQAQQ LQQQQATLGL SMRGPVAAAP  360
GSQLSWAEAW SESSSG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269\|PubMed:11390974, ECO:0000269\|PubMed:12855676, ECO:0000269\|PubMed:14704272, ECO:0000269\|PubMed:9311985}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004974066.1	1e-168	transcription factor RF2a
Swissprot	Q69IL4	4e-96	RF2A_ORYSJ; Transcription factor RF2a
TrEMBL	K3YMV4	1e-167	K3YMV4_SETIT; Uncharacterized protein
STRING	Si015587m	1e-168	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4269	38	68

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dai S,Zhang Z,Bick J,Beachy RN Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus. J. Gen. Virol., 2006. 87(Pt 3): p. 715-22 [PMID:16476995] Liu Y,Dai S,Beachy RN Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription. Biochem. J., 2007. 405(2): p. 243-9 [PMID:17371296] Dai S, et al. Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease. Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6 [PMID:19104064] Ordiz MI,Yang J,Barbazuk WB,Beachy RN Functional analysis of the activation domain of RF2a, a rice transcription factor. Plant Biotechnol. J., 2010. 8(7): p. 835-44 [PMID:20408988]