PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03410.1.g00070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ZF-HD | ||||||||
Protein Properties | Length: 231aa MW: 24618.2 Da PI: 7.1699 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 90.3 | 1.8e-28 | 25 | 73 | 5 | 57 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +YkeC++NhAa++Gg+a+DGCgEfmp+ ++ lkCaACgCHR+FHRr Zmw_sc03410.1.g00070.1.sm.mk 25 KYKECMRNHAAAIGGQAFDGCGEFMPA----DAPDPLKCAACGCHRSFHRRAA 73 7*************************9....4689****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 8.2E-24 | 25 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.4E-24 | 25 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-18 | 25 | 71 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.151 | 26 | 72 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.28E-18 | 89 | 157 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-29 | 89 | 158 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-26 | 98 | 155 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MMKHLSLVPY EGGSSGGNSG GGGDKYKECM RNHAAAIGGQ AFDGCGEFMP ADAPDPLKCA 60 ACGCHRSFHR RAATSGPTPP RPEDFGGGVG SGSGSVGRKR FRTKFTPEQK ERMREFAEQQ 120 GWRINRNDDG ALDRFCHEIG VRRQVLKVWM HNHKNHHNHH GQKMMSNSHL DASVPTPAAA 180 VAPGATAHGM INPAGATGAI PRDDDDDDED DTDDSPPRAA VSSPSPSPIS V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-24 | 99 | 155 | 18 | 74 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006653420.2 | 6e-70 | PREDICTED: zinc-finger homeodomain protein 8-like | ||||
Swissprot | Q9SB61 | 2e-42 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A0D9W546 | 8e-55 | A0A0D9W546_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR04G09930.1 | 1e-55 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 |
Publications ? help Back to Top | |||
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