PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc03372.1.g00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 401aa MW: 43182.3 Da PI: 6.614 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 112.8 | 4.7e-35 | 103 | 235 | 1 | 111 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa..sec.....e 74 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+++ak+ai el++ + +a + + e Zmw_sc03372.1.g00110.1.sm.mk 103 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIRNAKAAIEELPDRPEAAAaaE-AaaeatE 182 689**************************************************************44444211.1221123 PP TCP 75 aesssssasnsssg...........................kaaksaakskksqksaasalnla 111 +++++ s+s k s ++++s+as+ + Zmw_sc03372.1.g00110.1.sm.mk 183 QGEQVTSTS----YgfsnpggaitavaggsfvqhsvgadgvK-------SLFPSSSTASTTPAH 235 333333333....13445666677777777776433333330.......333333333333333 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.1E-32 | 105 | 231 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.615 | 106 | 164 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 401 aa Download sequence Send to blast |
MASRFKLEED KNQLSEGLDP WSNNPTATTS TLHYLLQEKE RAQAQEQLQI YHHQGFSYLE 60 HHRRQQQNQS TGGAGCDGLS SGESTPVDAL TTAFGSGRIV RSAAGRKDRH SKVCTARGLR 120 DRRVRLAAHT AIRFYDVQDR LGYDRPSKAV DWLIRNAKAA IEELPDRPEA AAAAEAAAEA 180 TEQGEQVTST SYGFSNPGGA ITAVAGGSFV QHSVGADGVK SLFPSSSTAS TTPAHDEYRG 240 SPPDLLSRTT SSQAQELCLT LQHNQHQIFS QVSSNHHGVI SGAGVPGFPE RNQRIPSWHA 300 SENSTGDGRG GGNGDSYMFG MQPQSQVLPQ GEPLQSSGGW ASARTWLDPL TAIQQPSTMT 360 GQIGFSHLIG GAGFMGFLAP ATTHQRLQCE EEQGSEAMRR D |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-20 | 111 | 165 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-20 | 111 | 165 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972181.1 | 0.0 | transcription factor PCF7 | ||||
Swissprot | Q8LT05 | 1e-153 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | A0A368RB94 | 0.0 | A0A368RB94_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb03208.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |