PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03327.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 195aa MW: 20856.5 Da PI: 9.5158

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03327.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.8	3.9e-08	15	64	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +e+ErrR ++++ +L +llPk + ls + +A YIk L Zmw_sc03327.1.g00070.1.am.mk 15 RKEIERRRTQEMRRLCVKLASLLPKEHYSSRDTLSQLGSVDEAAAYIKRL 64 589********************54455555*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.82	10	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.14E-4	15	68	No hit	No description
SuperFamily	SSF47459	1.44E-8	15	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-8	15	74	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.6E-4	16	70	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-5	16	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MTSSGSGTAP AAMERKEIER RRTQEMRRLC VKLASLLPKE HYSSRDTLSQ LGSVDEAAAY 60 IKRLKERVDA LHQKRSAAMG GGGASTSMAV TTSSDTGSEE RAAAAPVVEV RQHNDGSTLD 120 VVLISSAERP FKLHEVATVL EEEGAEIVNA NFSVTGQRIF HTIYCRLYMR IKRKTGAPNS 180 GNGLSGPAVG PAPGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457514.2	2e-64	transcription factor bHLH162
TrEMBL	A0A1B6Q2F7	5e-63	A0A1B6Q2F7_SORBI; Uncharacterized protein
STRING	Sb03g008570.1	1e-65	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133