PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03318.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 589aa    MW: 64890.8 Da    PI: 6.2146
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03318.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12419458145
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAaka 45 
                                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+ 
  Zmw_sc03318.1.g00040.1.am.mkhc 419 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARY 458
                                     78*******************......55**********7777763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-12419482IPR016177DNA-binding domain
PfamPF008471.9E-5419458IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-13420482IPR001471AP2/ERF domain
PROSITE profilePS5103213.709420481IPR001471AP2/ERF domain
SMARTSM003801.1E-27420487IPR001471AP2/ERF domain
CDDcd000182.07E-19420483No hitNo description
CDDcd000181.96E-11516561No hitNo description
SuperFamilySSF541712.75E-6516560IPR016177DNA-binding domain
SMARTSM003804.2E-13517565IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
GDPVRATASQ LACFMYTAAL SPWPSPAAPS MRRPPLDVHT SLALAATTEM PELEGDDEAA  60
TGCWFPERER ERGILVGPWI RNVWWGLSLD ESIELPYSVY SNAYEGLISS YASDIHVSHY  120
AFWSNSFRYL APTFTSQRAT RNAPQRIPAP SLFRIPSSPF PSATATARRR RLPELDGRQR  180
LGVRRQIDRP WRINVPQERL GTLLLLSLPP LVLLLEIDQA TCNPQESRGV LCLLCRELVG  240
SSLATTTRSS EMELDLNVAE VAPEKPASAA RSDSGTSESS VLNAEASAAP AEEGSSSTPP  300
PRAVLEFSIL RSSASAEGDS DAAGADEDDD ATPSPPRQLQ LQQPQPPQLV TRELFPAAAG  360
PPCPGPPHWA ELGFFRAEPP RTQTDIRILP HPHAPLPAPP PVQPQPAKKS RRGPRSRSSQ  420
YRGVTFYRRT GRWESHIWDC GKQVYLGGFD TAHAAARYAT ELAYDRAAIK FRGVDADINF  480
NLSDYEDDMK QMKSLSKEEF VHVLRRQSTG FSRGSSKYRG VTLHKCGRWE ARMGQFLGKK  540
AYDKAAIKCN GREAVTNFEP STYDGELLAE VSAEGTVLEM TTEISDDCD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806429.11e-135ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotB8AXC31e-123AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A0N7BW921e-139A0A0N7BW92_DENLA; Transcription factor AP2
STRINGTraes_1BS_E68807072.21e-132(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100832935