PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03314.1.g00040.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRF
Protein Properties Length: 450aa    MW: 48855.5 Da    PI: 10.0072
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03314.1.g00040.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.92.1e-24203247145
                             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                                     d+ep+rCrRtDGKkWRCs+++ +++k+CErH+hrgr+rsrk++e+
  Zmw_sc03314.1.g00040.1.sm.mkhc 203 DPEPWRCRRTDGKKWRCSKEAHPDSKYCERHMHRGRNRSRKPVES 247
                                     79****************************************986 PP
2QLQ62.51.2e-21133167236
                             QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 
                                      FTaaQ+++L++Q+l+yKyL+a++PvPp+Ll++i+
  Zmw_sc03314.1.g00040.1.sm.mkhc 133 VFTAAQWAELEQQALIYKYLMAGVPVPPDLLLPIR 167
                                     5********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.4E-12132168IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166623.468133168IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088805.2E-16134167IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.346203247IPR014977WRC domain
PfamPF088795.6E-21204246IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MPLGRVASGY TRKRQTSKEG RAELRIAVGR ASASKSKPKR YLQIPHAHHA PPSPPFLPLL  60
LASINGRHQE PSNPHLTSST SAGSAPVLYR LLAWEGREGG QVDAETVAAS MLSSAAMGMG  120
GFPHQQQPRG AAVFTAAQWA ELEQQALIYK YLMAGVPVPP DLLLPIRPHS AAAFSFGPAI  180
GAASSFYHHP SLSYYAYYGK KLDPEPWRCR RTDGKKWRCS KEAHPDSKYC ERHMHRGRNR  240
SRKPVESKSA SPAHQSQPQL STVTNATRDT EPLQSLAMGA KTHGLSLGGA GSSQLQVDAS  300
SYGSKFSLGG KADVGELSFL SGASGNSRGF TIDSSSDSSW HSLSSNVPPF TLSTTRDSGL  360
LSGAYNYSNL EPSQELGQVT IATLSQDQER HSFNSGTGGL MKQENQSLRP FFDEWPATRD  420
SWSEDRRKPA REPELSRAAH KDGLEVRSSF
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811709.11e-171growth-regulating factor 5-like isoform X1
SwissprotQ6AWY41e-171GRF5_ORYSJ; Growth-regulating factor 5
TrEMBLA0A0A9F0Q10.0A0A0A9F0Q1_ARUDO; Uncharacterized protein
STRINGSi008818m1e-169(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110462431
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]