PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03305.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 251aa MW: 27931.1 Da PI: 8.6269

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03305.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98	3.8e-31	192	242	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRrng+lKKA+E+SvLCdaeva i+fs++gklyey++ Zmw_sc03305.1.g00060.1.am.mk 192 KRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPRGKLYEYAT 242 79***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR00404	1.7E-28	186	206	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	28.679	189	244	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.5E-34	189	243	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.14E-27	189	248	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.83E-35	189	250	No hit	No description
Pfam	PF00319	2.2E-26	193	240	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-28	206	221	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.7E-28	221	242	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MGGTCQRGSA PSMEKAPTLL RKVKREGFPS NEGTTTRVVG CDGGGSFGFD ATRWPSIGTP 60 SDGLLMVQIL FRSRAEANVR VCQSELDSIH HLQTIDGSIE CLEIGLYGDG RTLTPAAALS 120 SCNCRILNQA CITCSKINHN TRERLTRWDQ ERVCQSELDS IHHYICFVFL APRTAPPPIS 180 SLFSLKLLVQ LKRIENKINR QVTFSKRRNG LLKKAHEISV LCDAEVAAIV FSPRGKLYEY 240 ATDSRYEFIH L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3mu6_A	2e-15	189	242	5	58	Myocyte-specific enhancer factor 2A
3mu6_B	2e-15	189	242	5	58	Myocyte-specific enhancer factor 2A
3mu6_C	2e-15	189	242	5	58	Myocyte-specific enhancer factor 2A
3mu6_D	2e-15	189	242	5	58	Myocyte-specific enhancer factor 2A

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP129	38	398