PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03303.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 276aa MW: 30215.6 Da PI: 4.8783

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03303.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.5	2.2e-18	90	143	4	56
-SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ft+eq++ Le+ F+ ++ +e++eLA++lgL+ rqV +WFqN+Ra+++ Zmw_sc03303.1.g00060.1.am.mkhc 90 KRRFTEEQVRSLETTFHArRAKLEPKEKAELARELGLQPRQVAIWFQNKRARWR 143 458************8899******************************9 PP
2	HD-ZIP_I/II	119.1	2.3e-38	88	181	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeene 78 e+krr+++eqv++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+dy+ L+++ydal++ e Zmw_sc03303.1.g00060.1.am.mkhc 88 ERKRRFTEEQVRSLETTFHARRaKLEPKEKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYADLRARYDALRDLVE 166 69***************9999**************************************************** PP HD-ZIP_I/II 79 rLekeveeLreelke 93 +L++e+ +L+++l+e Zmw_sc03303.1.g00060.1.am.mkhc 167 SLKQEKVALAAQLDE 181 ********99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.17E-17	73	147	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.265	84	145	IPR001356	Homeobox domain
SMART	SM00389	2.5E-17	87	149	IPR001356	Homeobox domain
Pfam	PF00046	8.9E-16	90	143	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	7.8E-19	90	151	IPR009057	Homeodomain-like
CDD	cd00086	1.18E-16	93	146	No hit	No description
PRINTS	PR00031	7.1E-7	116	125	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	120	143	IPR017970	Homeobox, conserved site
PRINTS	PR00031	7.1E-7	125	141	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.5E-12	145	186	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MRAVIDPAPE TGRCAAPGGR GEASLALAPQ LIDSCGPGIE AMERDCQFLV PPPPQHQHED 60 QLLHQLMMVG DQDPVGAAGM RGGGGGGERK RRFTEEQVRS LETTFHARRA KLEPKEKAEL 120 ARELGLQPRQ VAIWFQNKRA RWRSKQLEHD YADLRARYDA LRDLVESLKQ EKVALAAQLD 180 ELKGRLNERQ DQSGGSCNIT GGTASFDVDD KRNNNSSVSS QDDGAMAPAV ATSEDSTAAG 240 YYDDHAVAYG GGLPDPFCNP PELWDTWPLL EWNAVA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: In leaves by drought stress. {ECO:0000269\|PubMed:17999151}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001151825.1	1e-102	homeobox-leucine zipper protein ATHB-6
Swissprot	A2X7U1	1e-84	HOX24_ORYSI; Homeobox-leucine zipper protein HOX24
TrEMBL	A0A1E5W7L4	1e-102	A0A1E5W7L4_9POAL; Homeobox-leucine zipper protein HOX24
STRING	GRMZM2G117164_P01	1e-101	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4027	31	75