PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03294.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 299aa MW: 32134.1 Da PI: 4.3108 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.8 | 8.1e-18 | 39 | 82 | 13 | 56 |
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + Le+ Fe+++ + e+++eLA+klgL+ rqV vWFqNrRa++k Zmw_sc03294.1.g00080.1.sm.mkhc 39 HLLEKSFEEENRLEPERKTELARKLGLQPRQVAVWFQNRRARWK 82 67*****************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.3 | 4.3e-38 | 37 | 119 | 10 | 92 |
HD-ZIP_I/II 10 qvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 v+lLE+sFeee++LeperK+elar+LglqprqvavWFqnrRAR+ktkqlE+d+++Lk+++dal++++++L +++++Lr Zmw_sc03294.1.g00080.1.sm.mkhc 37 GVHLLEKSFEEENRLEPERKTELARKLGLQPRQVAVWFQNRRARWKTKQLERDFDRLKASFDALRADHDALLQDNHRLR 115 5899*************************************************************************** PP HD-ZIP_I/II 89 eelk 92 +++ Zmw_sc03294.1.g00080.1.sm.mkhc 116 SQVV 119 9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.1E-13 | 32 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.40E-16 | 38 | 85 | No hit | No description |
SuperFamily | SSF46689 | 1.31E-16 | 38 | 86 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 38 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 4.4E-15 | 39 | 82 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.888 | 41 | 84 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 1.8E-6 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.8E-6 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.6E-18 | 84 | 126 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MDSGRFIFNT TGSGAAQMLF LDCGMGGPAG GGLFHRGVHL LEKSFEEENR LEPERKTELA 60 RKLGLQPRQV AVWFQNRRAR WKTKQLERDF DRLKASFDAL RADHDALLQD NHRLRSQVVS 120 LTEKLQEKEE GGVGAAADTT EFTADVKQAS LAVDPEETAA EVAFDAQQVK SEDRLSTGSG 180 GSAVVDTDAL LGAGGALAAV DSSVESYFPA GDGHYTDCGM GPVDHHCAAE FQSEEDDGAG 240 SDEGCSYCPD DTAAAAAFFV GHAHHHVDDD EDDGELWMWN LACGHAFFCS ADGSSEVPC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813024.1 | 1e-119 | homeobox-leucine zipper protein HOX16-like isoform X1 | ||||
Swissprot | Q6YWR4 | 1e-100 | HOX16_ORYSJ; Homeobox-leucine zipper protein HOX16 | ||||
TrEMBL | A0A2S3GT38 | 1e-117 | A0A2S3GT38_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab02950.1.p | 1e-118 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2609 | 38 | 87 |
Publications ? help Back to Top | |||
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