PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03290.1.g00150.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 415aa    MW: 45282 Da    PI: 10.8532
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03290.1.g00150.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18296350256
                                   T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                      Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                   rk+ ++t+ q   Le+ F+ ++ +++++++eLA++ gL+ rqV+vWFqNrRa+ k
  Zmw_sc03290.1.g00150.1.am.mk 296 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTK 350
                                   788899***********************************************98 PP
2HD-ZIP_I/II102.53.6e-33296384189
                   HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 
                                   +kk+rl++ q++lLE+sF++++ L++ +K+elar+ gl++rqv+vWFqnrRARtk+k++E+d++ L+r+ d+l++enerL+
  Zmw_sc03290.1.g00150.1.am.mk 296 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTKLKKTEVDCKLLRRWRDRLTDENERLR 376
                                   69******************************************************************************* PP

                   HD-ZIP_I/II  82 keveeLre 89 
                                   ++ +eLr+
  Zmw_sc03290.1.g00150.1.am.mk 377 RDLDELRA 384
                                   ******94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-17277350IPR009057Homeodomain-like
PROSITE profilePS5007117.038292352IPR001356Homeobox domain
SMARTSM003894.2E-15294356IPR001356Homeobox domain
SuperFamilySSF466897.94E-18294359IPR009057Homeodomain-like
PfamPF000461.8E-15296350IPR001356Homeobox domain
CDDcd000867.44E-14296353No hitNo description
PRINTSPR000311.6E-5323332IPR000047Helix-turn-helix motif
PROSITE patternPS000270327350IPR017970Homeobox, conserved site
PRINTSPR000311.6E-5332348IPR000047Helix-turn-helix motif
SMARTSM003409.3E-13352395IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MVEIVKAPIR TISHGHDPGA RTVSKVEGTY TPSCRVVQHR TISHGHDPGA RTVSKVEGTY  60
TPSCRVVQHR TISHGHDPGA RTVSKVEGTY TPSCRVVQHL RSLCNRSTCR VNGDGGKSQP  120
LINSNRQAQG SSRPQTKLVE ATRPLAASPP PSSIGTQRLR GLFQFADRST AMSSLTTAGS  180
RSSMEECSAE FDTRLSLEIG ETSRATPPPQ SLRLFGELII SPQEQDHGGD GSLGHRGTTR  240
APVARRKRRA ECGGVASGDI DAAGGGRQNK KAIRTLQSSE EDNGDRQRIP SDGGSRKKLR  300
LTSAQAALLE DSFRAHNILT HAQKQELARR AGLSARQVQV WFQNRRARTK LKKTEVDCKL  360
LRRWRDRLTD ENERLRRDLD ELRAVSAARL PAAAVSVVCP YCCDKKMVAV AGDVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294300SRKKLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004951890.12e-64putative homeobox-leucine zipper protein HOX26
TrEMBLA0A1E5UWC55e-63A0A1E5UWC5_9POAL; Putative homeobox-leucine zipper protein HOX26
TrEMBLK3YVK95e-63K3YVK9_SETIT; Uncharacterized protein
STRINGSi018305m8e-64(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249