PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03287.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 326aa    MW: 35562.4 Da    PI: 9.7223
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03287.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.73.7e-19191225135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   C+ C+t kTplWR gp+g+k+LCnaCG++yrk+++
  Zmw_sc03287.1.g00060.1.am.mk 191 CADCHTRKTPLWRGGPEGPKSLCNACGIRYRKRRR 225
                                   ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13184225No hitNo description
PROSITE profilePS5011412.796185221IPR000679Zinc finger, GATA-type
SMARTSM004011.7E-17185246IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-15186243IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.08E-11190218No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003204.9E-17191225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MPVVVKEIQD AMALETSEVR GMCPFSPAVV SVRSGGTMRS YDMVMDKDIL LLMDDDSSGS  60
VSMLNLAGPA SEAGRCSDGP ESKKASGAVS PKRAGVFTSN HSTTGRALGF RVACPQRRLR  120
HHSTTAFHHY PVAQSRLLDS LSHNKQGWAI HPSIHLLVSL SDSIKMELET DSISPSPDDD  180
TTASGGEAKA CADCHTRKTP LWRGGPEGPK SLCNACGIRY RKRRRQTRGL DANAEAQDQQ  240
QQKKKAAAAS SGKDDKKTED KEEYEGEKKK EKQAVTVELR VVGFGKEVAG FSKLRQRRRM  300
RRKKCLSEEE RAAVLLMALS GAIYAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220224RKRRR
2292303KLRQRRRMRRKK
3295301QRRRMRR
4296303RRRMRRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9NUC32e-65A0A0A9NUC3_ARUDO; Uncharacterized protein
STRINGSi002983m9e-47(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892