PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03282.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 347aa MW: 39189.7 Da PI: 6.6517

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03282.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.8	7.6e-52	10	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknrat 78 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ + ++ewyfFs++dkky+tg+r+nrat Zmw_sc03282.1.g00030.1.am.mk 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTgPQSEWYFFSHKDKKYPTGTRTNRAT 89 69**************************.9***********943444442455****************** PP NAM 79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g+Wkatg+dk+++ + +gl+ktLvfy grap+g+ktdW+mheyrl Zmw_sc03282.1.g00030.1.am.mk 90 MAGFWKATGRDKAIFLGNAGRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139 ************9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-58	4	159	IPR003441	NAC domain
PROSITE profile	PS51005	57.424	10	159	IPR003441	NAC domain
Pfam	PF02365	3.7E-27	11	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MHPSSGSMSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQSEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAIFLGNAGR IGLRKTLVFY 120 IGRAPHGKKT DWIMHEYRLD EENVEVQEDG WVVCRVFKKK NYQRGLNPAE MAMVDDDELP 180 PLPVPVPGSM PAEHKQNPHL MHYDFPSFDP SMQLPQLMNA DQPVAALLSS QPSIAMGMSS 240 LDVECTQNLM KLTANSSQEM LHEGGGGGVD RFIPGTTDWS ILDKLLASHQ NLDQLFQGKQ 300 LVTAASAAPM VPYHQQLMEL GDTSSSLQRL PLRYLGGEAA DHLRFPK

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MHPSSGSMSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQSEWY FFSHKDKKYP TGTRTNRATM AGFWKATGRD KAIFLGNAGR IGLRKTLVFY  120
IGRAPHGKKT DWIMHEYRLD EENVEVQEDG WVVCRVFKKK NYQRGLNPAE MAMVDDDELP  180
PLPVPVPGSM PAEHKQNPHL MHYDFPSFDP SMQLPQLMNA DQPVAALLSS QPSIAMGMSS  240
LDVECTQNLM KLTANSSQEM LHEGGGGGVD RFIPGTTDWS ILDKLLASHQ NLDQLFQGKQ  300
LVTAASAAPM VPYHQQLMEL GDTSSSLQRL PLRYLGGEAA DHLRFPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-51	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-51	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-51	8	161	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-51	8	161	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	9e-51	8	161	18	170	NAC domain-containing protein 19
3swm_B	9e-51	8	161	18	170	NAC domain-containing protein 19
3swm_C	9e-51	8	161	18	170	NAC domain-containing protein 19
3swm_D	9e-51	8	161	18	170	NAC domain-containing protein 19
3swp_A	9e-51	8	161	18	170	NAC domain-containing protein 19
3swp_B	9e-51	8	161	18	170	NAC domain-containing protein 19
3swp_C	9e-51	8	161	18	170	NAC domain-containing protein 19
3swp_D	9e-51	8	161	18	170	NAC domain-containing protein 19
4dul_A	9e-51	8	161	15	167	NAC domain-containing protein 19
4dul_B	9e-51	8	161	15	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965525.1	0.0	NAC domain-containing protein 76
Swissprot	Q5Z6B6	1e-121	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	K3Y0W1	0.0	K3Y0W1_SETIT; Uncharacterized protein
STRING	Si007822m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]