PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc03281.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 256aa MW: 27678.9 Da PI: 6.8708 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66 | 7.4e-21 | 122 | 172 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+W+AeIrdp+ r +r +lg+f+taeeAa+a+++a+++++g+ Zmw_sc03281.1.g00040.1.sm.mk 122 VYRGVRQRP-WGKWAAEIRDPR----RaARKWLGTFDTAEEAARAYDRAALEFRGA 172 69*******.**********82....48*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.304 | 122 | 179 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 122 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.07E-23 | 122 | 180 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.6E-35 | 122 | 185 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-14 | 122 | 171 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.40E-32 | 123 | 181 | No hit | No description |
PRINTS | PR00367 | 1.2E-11 | 123 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 145 | 161 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 256 aa Download sequence Send to blast |
MTKKLVHAMA TSKRGPGAQI DNQRKQVSDY ADGRTMISHE QEHGIIVAAL RHVLSGYSTP 60 PPEVVTVASG EACGVCGIDG CLGCDFFTDD KAGPPELTQG VSYGTVTGGA EKRRRRRTRN 120 NVYRGVRQRP WGKWAAEIRD PRRAARKWLG TFDTAEEAAR AYDRAALEFR GARAKLNFPH 180 QEGPFLGHHG GDLIAATTET LTPPSPCSGD AEESAPGVWQ LGGPDGPGDE LWDGLRDVMK 240 MDDAEFWSLA SFSGAA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-21 | 123 | 179 | 6 | 63 | ATERF1 |
3gcc_A | 1e-21 | 123 | 179 | 6 | 63 | ATERF1 |
5wx9_A | 2e-21 | 123 | 181 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 111 | 116 | KRRRRR |
2 | 112 | 117 | RRRRRT |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460334.1 | 1e-87 | ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1E5WBD2 | 1e-90 | A0A1E5WBD2_9POAL; Uncharacterized protein | ||||
STRING | OPUNC09G11150.1 | 3e-87 | (Oryza punctata) | ||||
STRING | Sb02g026630.1 | 4e-87 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |