PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03259.1.g00070.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 253aa    MW: 27518.2 Da    PI: 9.3265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03259.1.g00070.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-183283156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g+
  Zmw_sc03259.1.g00070.1.am.mk 32 TRYLGVRRRP-WGRYAAEIRDPVT---KERHWLGTFDTADEAAIAYDRAARNIRGA 83
                                  5799******.**********754...5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.80E-273291No hitNo description
SuperFamilySSF541711.31E-203390IPR016177DNA-binding domain
PROSITE profilePS5103221.0083390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.0E-283390IPR001471AP2/ERF domain
SMARTSM003802.2E-313396IPR001471AP2/ERF domain
PfamPF008471.5E-103382IPR001471AP2/ERF domain
PRINTSPR003673.2E-83445IPR001471AP2/ERF domain
PRINTSPR003673.2E-85672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MDFSYFFSSP SSDKKSSKRR QQQQEPDSGS ATRYLGVRRR PWGRYAAEIR DPVTKERHWL  60
GTFDTADEAA IAYDRAARNI RGASARTNFA YPDLPPGSSV TPYLSPDISA DQLQQYYANP  120
VPAAQPTPAS NQLAAHQAVS SYGADDVSMA YGGNAEMDMM YNGGAGAGGR AWRRYRAGVR  180
REGYVHSPLL SPMPAADEVD GFQLGGSSSS RPPEGLRTSY FRRGVSGHRP PMAEGLQSTN  240
ELATETATGI HGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1733891471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11320KKSSKRRQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821358.18e-81ethylene-responsive transcription factor LEP-like
TrEMBLA0A1E5VG732e-86A0A1E5VG73_9POAL; Ethylene-responsive transcription factor LEP
STRINGPavir.Aa01903.1.p1e-83(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397