PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03255.1.g00060.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 537aa MW: 59704.7 Da PI: 10.9106

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03255.1.g00060.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.2	1.1e-11	466	535	17	92
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 lp f++++ k ++ +tl de ++++ + +++ l++GW++F+ +++L +gD vvF+l+++++f+ Zmw_sc03255.1.g00060.1.am.mk 466 GLPVGFCRKYLPK--RDERITLVDEADEEFDTLYL--APKRG--LSAGWRGFAVDHELVDGDCVVFELVEQTKFKV 535 69******433..4557***********4..44444..9********************998777744 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.0E-15	412	428	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.12E-18	413	537	No hit	No description
SMART	SM01019	9.1E-5	449	536	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.109	450	537	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	1.18E-14	465	536	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.0E-15	466	536	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.1E-9	466	535	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence Send to blast
LPRRRGGWLA LSSIARARQA VFLSAPSVDT NSHIYELLSL FIDIPKGGAF LRCPRGNPGS 60 FTPEVASPHP GSRLQGHNNG PSPLDLTLGR QRPSAAAPDC QLSFARGYRR GYCRSSPAAP 120 LASRVSSLVK ICIHSHRSPH PFLLSKRFVC HLGARRACTS AGQRSRNATA KAARRFMNRV 180 HKPKTPTPSF SLAVRPIQLL CYALCSPSKP AHPRNRKRWD SERGRSMADA ASYEEQRRRL 240 IEANKRKLEE LQLHHLSAAV RDAASGMLSP VGPASLYLPL FLLLQRSFIS ASAVGLLSSS 300 DLGLVRQAKK RKLRVPRHAA GKEAEPLRRS GRVASIPEKP NYRDVRACAP ICVFINRSTC 360 AQVVPDFERR IRRSSGRGRR RDLDNRVYAT EEERTYAITK AEEVAQGLGS GFPSFVKPMT 420 QSHVTGGFWL VKSWRLLPIT SCCRFPLSFT SVEVDISFGG LMELQGLPVG FCRKYLPKRD 480 ERITLVDEAD EEFDTLYLAP KRGLSAGWRG FAVDHELVDG DCVVFELVEQ TKFKVTF

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence Send to blast

LPRRRGGWLA LSSIARARQA VFLSAPSVDT NSHIYELLSL FIDIPKGGAF LRCPRGNPGS  60
FTPEVASPHP GSRLQGHNNG PSPLDLTLGR QRPSAAAPDC QLSFARGYRR GYCRSSPAAP  120
LASRVSSLVK ICIHSHRSPH PFLLSKRFVC HLGARRACTS AGQRSRNATA KAARRFMNRV  180
HKPKTPTPSF SLAVRPIQLL CYALCSPSKP AHPRNRKRWD SERGRSMADA ASYEEQRRRL  240
IEANKRKLEE LQLHHLSAAV RDAASGMLSP VGPASLYLPL FLLLQRSFIS ASAVGLLSSS  300
DLGLVRQAKK RKLRVPRHAA GKEAEPLRRS GRVASIPEKP NYRDVRACAP ICVFINRSTC  360
AQVVPDFERR IRRSSGRGRR RDLDNRVYAT EEERTYAITK AEEVAQGLGS GFPSFVKPMT  420
QSHVTGGFWL VKSWRLLPIT SCCRFPLSFT SVEVDISFGG LMELQGLPVG FCRKYLPKRD  480
ERITLVDEAD EEFDTLYLAP KRGLSAGWRG FAVDHELVDG DCVVFELVEQ TKFKVTF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972573.1	3e-89	B3 domain-containing protein Os06g0194400
Swissprot	Q69V36	2e-84	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A1E5W153	4e-92	A0A1E5W153_9POAL; B3 domain-containing protein
STRING	Si014404m	3e-88	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]