PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03253.1.g00070.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 245aa MW: 26785 Da PI: 8.7854

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03253.1.g00070.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58	1.6e-18	83	136	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +++keq + Lee F+ n++++ +++e LA kl+L rqV vWFqNrRa+ k Zmw_sc03253.1.g00070.1.am.mk 83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTK 136 67789***********************************************98 PP
2	HD-ZIP_I/II	120.8	7e-39	83	170	2	89
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++ Zmw_sc03253.1.g00070.1.am.mk 83 KKLRLSKEQSRLLEESFRLNHTLTPKQKEALAVKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQR 163 9****************************************************************************** PP HD-ZIP_I/II 83 eveeLre 89 eveeLr+ Zmw_sc03253.1.g00070.1.am.mk 164 EVEELRA 170 ***94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-18	62	136	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.43E-19	73	139	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.908	78	138	IPR001356	Homeobox domain
SMART	SM00389	9.7E-16	80	142	IPR001356	Homeobox domain
CDD	cd00086	8.89E-15	81	139	No hit	No description
Pfam	PF00046	1.0E-15	83	136	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	113	136	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.6E-10	138	171	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	7.1E-23	138	181	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MGATSPSASG LELTMAVPGL SSSSGSEGLA GCNNGNGNGN TNVRVDLDMN QPASGGEEEE 60 FPMGSVEEDE EERACGGGPH RPKKLRLSKE QSRLLEESFR LNHTLTPKQK EALAVKLKLR 120 PRQVEVWFQN RRARTKLKQT EMECEYLKRC FGSLTEENRR LQREVEELRA MRVAPPTVLS 180 PHTRQPLPAS ALTMCPRCER XXALTMCPRC ERITAATGPA AARTGALAPP AAASPFHPRR 240 PSAAF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	130	138	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.
UniProt	Probable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269\|PubMed:10732669}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819203.1	1e-123	homeobox-leucine zipper protein HOX3-like
Swissprot	Q0JKX1	1e-121	HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
Swissprot	Q9XH38	1e-121	HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBL	A0A2T7DJ80	1e-127	A0A2T7DJ80_9POAL; Uncharacterized protein
STRING	Si002823m	1e-120	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6826	35	49