PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03251.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 275aa MW: 30229 Da PI: 10.5227

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03251.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	100.1	1.3e-31	32	136	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 f+kv tpsdv+k++rlv+pk++ae++ + +e++ l++ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++g Zmw_sc03251.1.g00100.1.am.mk 32 FDKVVTPSDVGKLNRLVIPKQHAEKYfplgSAANEKGLLLSFEDRTGKPWRFRYSYWNSSQSYVITKGWSRFVKEKRLDAG 112 89*************************955556888*************************************** PP -EEEEEE-.SS.SEE..EEEEE-S CS B3 78 DfvvFkld.gr.sefelvvkvfrk 99 D+v F + g+ +++l++ ++r+ Zmw_sc03251.1.g00100.1.am.mk 113 DTVSFGRGvGEhARGRLFIDWRRR 136 **6558889999*99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.8E-41	26	142	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	8.11E-29	29	139	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.28E-26	30	117	No hit	No description
SMART	SM01019	4.5E-21	32	137	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-28	32	136	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.452	32	137	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MTTELTAGPI RSGGGGGGGD DAAVAVEKEH MFDKVVTPSD VGKLNRLVIP KQHAEKYFPL 60 GSAANEKGLL LSFEDRTGKP WRFRYSYWNS SQSYVITKGW SRFVKEKRLD AGDTVSFGRG 120 VGEHARGRLF IDWRRRPEPP APYYHHRLAI PSSLPFAPWA RAHYPAGIGG AGRTVLHLPP 180 SPSSLYDSHR RRHDVYTPST RQVLLYRPHQ QQQATVVQES GLVRTPTSTP GQAEPPSVES 240 SGSKRLRLFG VNLDCAAGSE EGKGKGRRSA PPQPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	7e-63	27	138	3	115	B3 domain-containing transcription factor NGA1
5os9_B	7e-63	27	138	3	115	B3 domain-containing transcription factor NGA1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025798126.1	1e-125	B3 domain-containing protein Os03g0120900-like
Swissprot	Q8LMR9	1e-102	Y3209_ORYSJ; B3 domain-containing protein Os03g0120900
TrEMBL	A0A1E5W4M9	1e-128	A0A1E5W4M9_9POAL; B3 domain-containing protein
STRING	Pavir.Ia04549.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP583	37	168

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]