PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03232.1.g00050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 414aa MW: 45337.9 Da PI: 9.5234 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 111 | 164 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq+e Le F++++++ + ++ +LA++lgL+ +qV vWFqNrRa++k Zmw_sc03232.1.g00050.1.am.mk 111 KKRRLSDEQVEMLELSFREEQKLETGRKVHLAAELGLDPKQVAVWFQNRRARHK 164 45589***********************************************99 PP | |||||||
2 | HD-ZIP_I/II | 114.5 | 6.4e-37 | 111 | 201 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLek 82 kkrrls+eqv++LE sF+ee+kLe+ rKv+la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da ++++Le+ Zmw_sc03232.1.g00050.1.am.mk 111 KKRRLSDEQVEMLELSFREEQKLETGRKVHLAAELGLDPKQVAVWFQNRRARHKSKLLEEEFAKLKQAHDAAILHKCHLEN 191 9******************************************************************************** PP HD-ZIP_I/II 83 eveeLreelk 92 ev +L+e+l Zmw_sc03232.1.g00050.1.am.mk 192 EVLRLKERLV 201 ******9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.342 | 106 | 166 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.05E-16 | 109 | 165 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.4E-17 | 109 | 170 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.67E-15 | 111 | 166 | No hit | No description |
Pfam | PF00046 | 8.5E-16 | 111 | 164 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-18 | 111 | 164 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 3.0E-5 | 137 | 146 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 141 | 164 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.0E-5 | 146 | 162 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MHGPARKAIT YPATRPASAT GVGRARERRQ SMEQYDELQH QLFPSTFVDM DSSLLAANGT 60 YAARRLGVIF NKRLACVAQG EERPRARRRR RRAARCSGVE AGGEVDAGDP KKRRLSDEQV 120 EMLELSFREE QKLETGRKVH LAAELGLDPK QVAVWFQNRR ARHKSKLLEE EFAKLKQAHD 180 AAILHKCHLE NEVLRLKERL VVAEEELARL RSAGSHAVSG GDGGDVMGRI VGSGSPSSSF 240 STGICHQQAG VGSVVDQLGD DDLIYVPDVA DYAYADSSVV EWFSLYGLIG HLCYQRAGIG 300 TELAAERCHS PSNTRVRAHG DLAISGYRAR PGRSTHLIWE RRRTIERMND RAAGTAPNSI 360 TTVDEATRAI TDATGDTHAG GRPASTLAEP SWASGKPAPR ATLRFARSLS QITA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 91 | RPRARRRRRR |
2 | 86 | 94 | RRRRRRAAR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00473 | DAP | Transfer from AT4G36740 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460922.1 | 3e-90 | homeobox-leucine zipper protein HOX14 | ||||
TrEMBL | A0A1E5VQE4 | 1e-90 | A0A1E5VQE4_9POAL; Homeobox-leucine zipper protein HOX14 | ||||
STRING | Pavir.J09638.1.p | 5e-91 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2006 | 38 | 101 |