PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03225.1.g00090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 188aa    MW: 21021.9 Da    PI: 7.7088
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03225.1.g00090.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.83.2e-2667168199
                                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS
                              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 
                                     f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a+
  Zmw_sc03225.1.g00090.1.es.mkhc  67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVNAK 143
                                     99*****************************8544444..48************************************* PP

                                     T--TT-EEEEEE-SSSEE..EEEEE-S CS
                              B3  73 gLkegDfvvFkldgrsefelvvkvfrk 99 
                                     +L +gD+v+F   ++++ +l+++++r+
  Zmw_sc03225.1.g00090.1.es.mkhc 144 RLVAGDSVLFA--WNENNQLLLGIRRA 168
                                     ***********..7888889****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-4951187IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-4560182IPR015300DNA-binding pseudobarrel domain
CDDcd100176.74E-2566167No hitNo description
SMARTSM010191.2E-2567169IPR003340B3 DNA binding domain
PfamPF023627.8E-2567168IPR003340B3 DNA binding domain
PROSITE profilePS5086313.47967169IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEAQIPNYPS LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDS FLPADLGTTS  60
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAK DLHGNEWKFR  120
HIFRGQPKRH LLTTGWSVFV NAKRLVAGDS VLFAWNENNQ LLLGIRRANR PQTVMPSSVL  180
SSDSMHIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-94418895279Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021315059.11e-126auxin response factor 6 isoform X2
SwissprotA2X1A11e-125ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V41e-125ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A453NF791e-128A0A453NF79_AEGTS; Auxin response factor
STRINGevm.model.supercontig_17.531e-126(Carica papaya)
STRINGMLOC_66152.21e-126(Hordeum vulgare)
STRINGSb04g004430.11e-125(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]