PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc03225.1.g00090.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 188aa MW: 21021.9 Da PI: 7.7088 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 82.8 | 3.2e-26 | 67 | 168 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkan 72 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a+ Zmw_sc03225.1.g00090.1.es.mkhc 67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVNAK 143 99*****************************8544444..48************************************* PP T--TT-EEEEEE-SSSEE..EEEEE-S CS B3 73 gLkegDfvvFkldgrsefelvvkvfrk 99 +L +gD+v+F ++++ +l+++++r+ Zmw_sc03225.1.g00090.1.es.mkhc 144 RLVAGDSVLFA--WNENNQLLLGIRRA 168 ***********..7888889****997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.83E-49 | 51 | 187 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.8E-45 | 60 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.74E-25 | 66 | 167 | No hit | No description |
SMART | SM01019 | 1.2E-25 | 67 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.8E-25 | 67 | 168 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.479 | 67 | 169 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MEAQIPNYPS LPPQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDS FLPADLGTTS 60 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAK DLHGNEWKFR 120 HIFRGQPKRH LLTTGWSVFV NAKRLVAGDS VLFAWNENNQ LLLGIRRANR PQTVMPSSVL 180 SSDSMHIG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 9e-94 | 4 | 188 | 95 | 279 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021315059.1 | 1e-126 | auxin response factor 6 isoform X2 | ||||
Swissprot | A2X1A1 | 1e-125 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 1e-125 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A453NF79 | 1e-128 | A0A453NF79_AEGTS; Auxin response factor | ||||
STRING | evm.model.supercontig_17.53 | 1e-126 | (Carica papaya) | ||||
STRING | MLOC_66152.2 | 1e-126 | (Hordeum vulgare) | ||||
STRING | Sb04g004430.1 | 1e-125 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Publications ? help Back to Top | |||
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