PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03203.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 204aa    MW: 21820.3 Da    PI: 6.5004
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03203.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-102854127
                                    --S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                                    ++++ C +++rtG C +G+rC+++H++
  Zmw_sc03203.1.g00080.1.sm.mkhc 28 PGEADCGYYLRTGGCGFGERCRYNHPR 54
                                    57899********************96 PP
2zf-CCCH375.7e-1279103327
                                     S---SGGGGTS--TTTTT-SS-SSS CS
                         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                                     ++ C ++ +tGtCk+G++Ck++H++
  Zmw_sc03203.1.g00080.1.sm.mkhc  79 QPVCEYYVKTGTCKFGSSCKYHHPK 103
                                     789********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-42754IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2632755IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-82954IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-53155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-43354IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-676103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.42276104IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-779105IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-979103IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-681104IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MWRLGLDGSA GGGEGQEEEA AARLPERPGE ADCGYYLRTG GCGFGERCRY NHPRDPGGTE  60
FGGGANNGAA SDFPERLGQP VCEYYVKTGT CKFGSSCKYH HPKKDGSLQA VLLNNNGFPI  120
RLASVNPVTS DGAQQTVQAG HYGIGHHGSS TTLDNRTIMN KNMYSQSGQG SLSLERVLSL  180
VLTMPKMDIA DMELLANMIT QSVQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150480.14e-61uncharacterized protein LOC100284111
SwissprotQ5NAW29e-56C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A1D6FBY25e-61A0A1D6FBY2_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBLC0PDQ72e-60C0PDQ7_MAIZE; Zinc finger CCCH domain-containing protein 58
TrEMBLK0DF592e-60K0DF59_MAIZE; C3H28 transcription factor (Fragment)
STRINGGRMZM2G036837_P014e-61(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2836235
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]