PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03202.1.g00130.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 382aa MW: 42104.3 Da PI: 11.0428

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03202.1.g00130.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.8e-18	264	318	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+ q Le+ F+ ++ +++++++eLA++ gL+ rqV+vWFqNrRa+ k Zmw_sc03202.1.g00130.1.am.mk 264 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTK 318 788899***********************************************98 PP
2	HD-ZIP_I/II	102.7	3.1e-33	264	352	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl++ q++lLE+sF++++ L++ +K+elar+ gl++rqv+vWFqnrRARtk+k++E+d++ L+r+ d+l++enerL+ Zmw_sc03202.1.g00130.1.am.mk 264 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTKLKKTEVDCKLLRRWRDRLTDENERLR 344 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLre 89 ++ +eLr+ Zmw_sc03202.1.g00130.1.am.mk 345 RDLDELRA 352 ****94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-17	245	318	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.1E-18	257	321	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	260	320	IPR001356	Homeobox domain
SMART	SM00389	4.2E-15	262	324	IPR001356	Homeobox domain
Pfam	PF00046	1.6E-15	264	318	IPR001356	Homeobox domain
CDD	cd00086	2.90E-13	264	321	No hit	No description
PRINTS	PR00031	1.4E-5	291	300	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	295	318	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.4E-5	300	316	IPR000047	Helix-turn-helix motif
SMART	SM00340	9.3E-13	320	363	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MSRLACRVNG DGGKSQPLIN SYRQGTFRTR GVTYARNGFR ATESSRRKSH GASVSSAVTK 60 PLLIDRTTAD RGRLEAASSD DPTYQAHTRS SVARGMPPYK TRPSQHKAPQ DLKLSSSRLR 120 DHWPPRLRGL FQFADRSTAM SSLTTAGSRS SMEECSAEFD TRLSLEIGET SRATPPPQSL 180 RLFGELIISP QEQDHGGDGS LGHRETTRAP VAGRKRRAEC GGVASGDIDA AGGGRQNKKA 240 IRTLQSSEED NGDRQRIPSD GGSRKKLRLT SAQAALLEDS FRAHNILTHA QKQELARRAG 300 LSARQVQVWF QNRRARTKLK KTEVDCKLLR RWRDRLTDEN ERLRRDLDEL RAVSAARLPA 360 AAVSVVCPYC CDKMVAVAGD VA

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MSRLACRVNG DGGKSQPLIN SYRQGTFRTR GVTYARNGFR ATESSRRKSH GASVSSAVTK  60
PLLIDRTTAD RGRLEAASSD DPTYQAHTRS SVARGMPPYK TRPSQHKAPQ DLKLSSSRLR  120
DHWPPRLRGL FQFADRSTAM SSLTTAGSRS SMEECSAEFD TRLSLEIGET SRATPPPQSL  180
RLFGELIISP QEQDHGGDGS LGHRETTRAP VAGRKRRAEC GGVASGDIDA AGGGRQNKKA  240
IRTLQSSEED NGDRQRIPSD GGSRKKLRLT SAQAALLEDS FRAHNILTHA QKQELARRAG  300
LSARQVQVWF QNRRARTKLK KTEVDCKLLR RWRDRLTDEN ERLRRDLDEL RAVSAARLPA  360
AAVSVVCPYC CDKMVAVAGD VA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	268	SRKKLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951890.1	2e-63	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	9e-43	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	A0A1E5UWC5	1e-65	A0A1E5UWC5_9POAL; Putative homeobox-leucine zipper protein HOX26
STRING	Pavir.Aa03244.1.p	1e-66	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49