PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03192.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 522aa    MW: 55322.9 Da    PI: 8.2023
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03192.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.71.7e-091341801455
                           AP2  14 rWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   r++A+++d  ++n    k+ k+++lg +  +e Aa+a++ a++k++g
  Zmw_sc03192.1.g00060.1.am.mk 134 RFEAHLWDkGTWNPtqkKKgKQVYLGAYNEEEAAARAYDLAALKYWG 180
                                   78999999877744555447*************************98 PP
2AP2249.7e-08223266155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s+y+GV +++ +grW+A+I   +               t eeAa+a++ a+ +++g
  Zmw_sc03192.1.g00060.1.am.mk 223 SKYRGVARHHHNGRWEARIGRvF-G-----------NNTQEEAARAYDIAAIEYRG 266
                                   89****99**********77733.2...........2356**************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.0E-17128194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-12128188IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-12128189IPR016177DNA-binding domain
PROSITE profilePS5103217.635128188IPR001471AP2/ERF domain
PfamPF008473.9E-6133180IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-11223276IPR016177DNA-binding domain
CDDcd000182.30E-16223276No hitNo description
SMARTSM003802.9E-14224280IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-8224275IPR001471AP2/ERF domain
PROSITE profilePS5103212.958224274IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 522 aa     Download sequence    Send to blast
MNDAPRPTQG HDALASLAPS RVHARQPLPT ASHVQVKFQM TPALERRSEF QHVPPCRLLV  60
KDELNGIGGG GGRGALYCTA APRGGGGDGP MKSVKRRKRE PSTAAVGKEL AGGDKSGSGG  120
NAAKRSSRFR GVSRFEAHLW DKGTWNPTQK KKGKQVYLGA YNEEEAAARA YDLAALKYWG  180
PSTYTNFPVV DYEKELKVMQ NVSKEEYLAS IRRKSNGFSR GVSKYRGVAR HHHNGRWEAR  240
IGRVFGNNTQ EEAARAYDIA AIEYRGINAV TNFDLSSYIR WLKPAGAGAV EDGNSGGTPT  300
SGVKPAILPS LCLQGVHQAA GSLLQHTHGA AAILQGGSLA GLDDVGSAYA SGPRLTAVCG  360
RPTGALTGLD DVSSVYTGGP SPTAVCGRPS PSSSATALSL LLRSSMFQEL VARNADAAAQ  420
AEQLPAAAEV DHVTASDVEA DIKPALEEPP TGETGDALYD AGADDAFACS MYELDDSFAC  480
MQQSFWNYCL YVPNGPFLRS DKVDCPSVSR VPHAAPSCNC VV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197KSVKRRK
2146154PTQKKKGKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022681620.10.0AP2-like ethylene-responsive transcription factor AIL5
TrEMBLK3Y0Z51e-177K3Y0Z5_SETIT; Uncharacterized protein
STRINGSi007857m1e-178(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473