PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03190.1.g00080.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 507aa MW: 55398.4 Da PI: 9.0966

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03190.1.g00080.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	339	8.2e-104	18	292	74	351
GRAS 74 sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgs 154 ++++ ++ f+e++P+lkf+h+taNqaIleav+g +vH+iDf+++qGlQWpaL+qaLa Rp+gpp lRiTg+g+p++ Zmw_sc03190.1.g00080.1.am.mk 18 AADHALLYHHFYEACPYLKFAHFTANQAILEAVQGRAEVHVIDFSLMQGLQWPALIQALALRPGGPPFLRITGIGPPSPPG 98 7888999999********************************************************************* PP GRAS 155 keeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235 ++ l+ +g rLa++A++++vpf f+ ++a+rl+++++++L+v+pgEa+aVn+vlqlhrll ++ + + ++d+vL++v s++ Zmw_sc03190.1.g00080.1.am.mk 99 RDDLRDVGLRLADLARSVRVPFAFRGVAANRLDEVRPWMLQVSPGEAVAVNSVLQLHRLLGDPSADRAPIDAVLDCVSSVR 179 ***************************************************************************** PP GRAS 236 PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316 Pkv++vveqeadhn++ Fl+rf+eal yysa+fdsl+a + +v +++l+rei+++v++ega r+erhe l++Wr Zmw_sc03190.1.g00080.1.am.mk 180 PKVFTVVEQEADHNKPGFLDRFTEALFYYSAVFDSLDAA---SGGAGDTVAEAYLEREICDIVCAEGAVRKERHEPLQRWR 257 ********************************999...358888999999*********************** PP GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrv 351 erl++aG+ +vpl+ +a qa++l+ ++++g+ v Zmw_sc03190.1.g00080.1.am.mk 258 ERLGRAGLAAVPLGANALRQARMLVGLFSGEGHCV 292 ***************************998755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.715	1	295	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-101	18	292	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
LSRRLFPPPT SPPPAPPAAD HALLYHHFYE ACPYLKFAHF TANQAILEAV QGRAEVHVID 60 FSLMQGLQWP ALIQALALRP GGPPFLRITG IGPPSPPGRD DLRDVGLRLA DLARSVRVPF 120 AFRGVAANRL DEVRPWMLQV SPGEAVAVNS VLQLHRLLGD PSADRAPIDA VLDCVSSVRP 180 KVFTVVEQEA DHNKPGFLDR FTEALFYYSA VFDSLDAASG GAGDTVAEAY LEREICDIVC 240 AEGAVRKERH EPLQRWRERL GRAGLAAVPL GANALRQARM LVGLFSGEGH CVCAALPWRG 300 SAAKALGCTL ALRHDHGGKQ ISPCVEAAAA VSRFDVQAPP NRTKFFWVWP PCRYRDARRC 360 PPCKFETEGM RGAPYWAPSS NGKPVTSLKP KCVRHDRTCV HLARARGSEA RKSGLATEAR 420 CVARKRRERS QGIGPPAGLR SLYVLGDVEG VRRRAEQPPL REPNGVEPVP PFPAVREGSS 480 GHAFSREDVA SVLQSRKTER PVSDDDI

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

LSRRLFPPPT SPPPAPPAAD HALLYHHFYE ACPYLKFAHF TANQAILEAV QGRAEVHVID  60
FSLMQGLQWP ALIQALALRP GGPPFLRITG IGPPSPPGRD DLRDVGLRLA DLARSVRVPF  120
AFRGVAANRL DEVRPWMLQV SPGEAVAVNS VLQLHRLLGD PSADRAPIDA VLDCVSSVRP  180
KVFTVVEQEA DHNKPGFLDR FTEALFYYSA VFDSLDAASG GAGDTVAEAY LEREICDIVC  240
AEGAVRKERH EPLQRWRERL GRAGLAAVPL GANALRQARM LVGLFSGEGH CVCAALPWRG  300
SAAKALGCTL ALRHDHGGKQ ISPCVEAAAA VSRFDVQAPP NRTKFFWVWP PCRYRDARRC  360
PPCKFETEGM RGAPYWAPSS NGKPVTSLKP KCVRHDRTCV HLARARGSEA RKSGLATEAR  420
CVARKRRERS QGIGPPAGLR SLYVLGDVEG VRRRAEQPPL REPNGVEPVP PFPAVREGSS  480
GHAFSREDVA SVLQSRKTER PVSDDDI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-46	25	293	99	357	Protein SCARECROW
5b3h_A	2e-46	25	293	98	356	Protein SCARECROW
5b3h_D	2e-46	25	293	98	356	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624056.1	1e-174	DELLA protein SLN1
Swissprot	Q9LQT8	1e-107	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A0E0MZZ3	1e-172	A0A0E0MZZ3_ORYRU; Uncharacterized protein
TrEMBL	B7F9I5	1e-172	B7F9I5_ORYSJ; Os01g0646300 protein
TrEMBL	B8A6W0	1e-172	B8A6W0_ORYSI; Uncharacterized protein
TrEMBL	Q6S5L6	1e-172	Q6S5L6_ORYSA; GAI protein
TrEMBL	Q9AS97	1e-172	Q9AS97_ORYSJ; Gibberellin response modulator-like
STRING	ORUFI01G27440.1	1e-173	(Oryza rufipogon)
STRING	OS01T0646300-01	1e-173	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]