PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03183.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 352aa MW: 38858.9 Da PI: 5.4622

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03183.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	120	173	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q+++Le++F +++++ e+++++A+ l+L rqV vWFqNrRa++k Zmw_sc03183.1.g00010.1.am.mk 120 KKRRLAADQVRALERCFDADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 173 4557899**********************************************9 PP
2	HD-ZIP_I/II	124.1	6.6e-40	119	211	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 ekkrrl+++qv++LE++F++++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d+++L++++dal++e ++L+ Zmw_sc03183.1.g00010.1.am.mk 119 EKKRRLAADQVRALERCFDADNKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFNSLRARHDALRHECDELR 199 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLreelke 93 +++++L++e++e Zmw_sc03183.1.g00010.1.am.mk 200 RDKDALAAEIRE 211 *****99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.001	115	175	IPR001356	Homeobox domain
SuperFamily	SSF46689	9.61E-18	116	177	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-18	118	179	IPR001356	Homeobox domain
CDD	cd00086	1.27E-15	120	176	No hit	No description
Pfam	PF00046	2.2E-16	120	173	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.0E-18	126	174	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	150	173	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.2E-14	175	216	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
PASLSAPGIH LSTEFHVQLL HHTPLPQVGV GSAAALSLHP SLPRPFLSQE LSTMKRPSCR 60 GFSSVASQEA QEQREDSSRS MEQGLDVHAK RDDAVAGAYD EEEEEDEDEL VGGRGGLGEK 120 KRRLAADQVR ALERCFDADN KLDPERKARI ARDLRLHPRQ VAVWFQNRRA RWKTKQIERD 180 FNSLRARHDA LRHECDELRR DKDALAAEIR ELREKVEKQM SIRELREKVE KQMSVKLESA 240 EDRLLPGSVA AATAVHKDGS TDSDSSAVFN EEASPYSGGA AFDHHPSFTG FTSSFLAPSS 300 TLSSSFPFMY SGGPHLDQEA DGFLGAVATA DSFFAAEEQG TGLGSWYGGE GW

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

PASLSAPGIH LSTEFHVQLL HHTPLPQVGV GSAAALSLHP SLPRPFLSQE LSTMKRPSCR  60
GFSSVASQEA QEQREDSSRS MEQGLDVHAK RDDAVAGAYD EEEEEDEDEL VGGRGGLGEK  120
KRRLAADQVR ALERCFDADN KLDPERKARI ARDLRLHPRQ VAVWFQNRRA RWKTKQIERD  180
FNSLRARHDA LRHECDELRR DKDALAAEIR ELREKVEKQM SIRELREKVE KQMSVKLESA  240
EDRLLPGSVA AATAVHKDGS TDSDSSAVFN EEASPYSGGA AFDHHPSFTG FTSSFLAPSS  300
TLSSSFPFMY SGGPHLDQEA DGFLGAVATA DSFFAAEEQG TGLGSWYGGE GW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	175	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012704164.1	1e-117	homeobox-leucine zipper protein HOX8 isoform X1
Swissprot	Q338Z7	5e-84	HOX8_ORYSJ; Homeobox-leucine zipper protein HOX8
TrEMBL	A0A0A9JEK4	1e-123	A0A0A9JEK4_ARUDO; Uncharacterized protein
STRING	Si040014m	1e-118	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4283	31	70

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]