PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03171.1.g00080.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 277aa    MW: 30814.2 Da    PI: 11.1554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03171.1.g00080.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19201249153
                           AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkl 53 
                                   ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  +
  Zmw_sc03171.1.g00080.1.am.mk 201 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDEAAVLM 249
                                   59*******9.**********8.....334*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.42E-31201260No hitNo description
SuperFamilySSF541713.73E-20202260IPR016177DNA-binding domain
PfamPF008471.2E-11202246IPR001471AP2/ERF domain
PROSITE profilePS5103221.878202259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-33202259IPR001471AP2/ERF domain
SMARTSM003809.7E-39202265IPR001471AP2/ERF domain
PRINTSPR003671.9E-10203214IPR001471AP2/ERF domain
PRINTSPR003671.9E-10225241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MDLILGSLHG LTAQDSQPPP RPACTFHGRA ARAFTAKDPS EQLQQQKVPS AKNSLTHVSE  60
WSRALRSWFG SLRARLQPSS NIINEVAKGV EGGYATRYSS PTAQRTRLIF FIFLPPVFPP  120
HHTKIRRLLG LGSLYSPARR EPEHYSSPHT PYCGGTHSRT ACPELIPSLP SAGPAFSVLP  180
WRRICRPCPP AEQRISMVQS KKFRGVRQRH WGSWVSEIRH PLLKRRVWLG TFETAEEAAR  240
AYDEAAVLMS GRNAKTNFPV PRSATGELAP VPAARDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15198267170ATERF1
3gcc_A2e-15198267170ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118