PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc03170.1.g00020.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 1099aa MW: 119529 Da PI: 10.5002

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc03170.1.g00020.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.6	1.4e-20	776	831	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ ++t++q+++Le+lF++ ++p++++r+eL+k+lgL+ rq+k+WFqNrR+++k Zmw_sc03170.1.g00020.1.am.mk 776 KKRYNRHTPHQIQQLEALFKQYPHPDEKQRAELSKRLGLEPRQIKFWFQNRRTQMK 831 5677899**********************************************999 PP
2	START	37.2	7e-13	893	937	159	203
TCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 159 nghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 + + vtwveh+++++++ h+l+r+l++sgla+ga +w+atlqrq Zmw_sc03170.1.g00020.1.am.mk 893 DELTHVTWVEHTEYDEASMHQLYRPLLQSGLAFGAGRWLATLQRQ 937 45599**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.04E-20	758	833	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.0E-23	760	827	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.398	773	833	IPR001356	Homeobox domain
SMART	SM00389	1.8E-19	774	837	IPR001356	Homeobox domain
CDD	cd00086	5.70E-19	775	833	No hit	No description
Pfam	PF00046	4.6E-18	776	831	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	808	831	IPR017970	Homeobox, conserved site
Pfam	PF01852	7.4E-9	893	937	IPR002913	START domain
SuperFamily	SSF55961	1.39E-6	985	1092	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1099 aa Download sequence Send to blast
MAIVIELREA APRQVNGAIS TNEPSHALAF LLVTTFHTPT RKAFPKHSSR LLVLLSSPKA 60 ARLFPVVPSV QAFRLSNLDQ FLQLAGHESL HVPLLGAEPN WETFRGSVAS LLCAPCCEQT 120 VAVSTAVHTR SDRRFSATPS FHTSMDSNRR SLLRHVRKSP TNGDGHCGSI RGLIAAHRLK 180 PTDRSYAAKV SAVPLYSSAS EILARYVVAV WQRTCRRNVP CVRTIVCLAR DNEKDSTAPL 240 GAAAGAQSFI HRGRGRSVLV MVGTARGPPR KASWDGQPAR TWAEHSGGRR AWRSWTPGSR 300 WTTTRTLGGP LRRGQTWVRG PPDSRAAHTV KGDGELLVTV VVVWLSTLIA FFWKTPVRTN 360 DMSLTFGSAI VSHGREEWPH RGQRGLAEHP QSPHVHTGSV TRRSRLHGRV FFNLHEIIDS 420 LLNPSAWLHP NDTASVGNLQ SLEAIRDANL VWPRGPCMSK KKKKNGRARL KLNRTPPEDA 480 CPVRTRQRFG CYRPDHRHSV SHSIVQPPTP RHGDYPCPAL MVRRDRLASA CAFVSPQRPL 540 NSPTASHPSD PRHTVLAALT PRPAPTQIQP HRAPPSFPVD PGGVPSEEKQ TSGQSRGAAA 600 PNNTNARPID CPWLHILLQD QRPGLLLTCP AQGSTHGTLQ GKGGGAGEPS YCPVPGSLLL 660 PLLLLTCLAG SLRFHSAPSA ATGGGRAHEE RAAAQGMSFG VPRSLRRRRV XXXAGRDGGV 720 GRTGSSSAVR GGGIAATDAS EVVENGSLSA CDHADAVFSG GGSEDDADAG NPRKRKKRYN 780 RHTPHQIQQL EALFKQYPHP DEKQRAELSK RLGLEPRQIK FWFQNRRTQM KTQLERHENA 840 LLKQENDKLR AENQSVREAL TNLVCGNCGG PAMLGEVSLE EHHLRLENAR LRDELTHVTW 900 VEHTEYDEAS MHQLYRPLLQ SGLAFGAGRW LATLQRQWVS ASSAREWSKL DCLTGSIGAD 960 VRVMVRKSVD EPGVPPGVVL SAATSPTSTN QNSMLILQET CTDESGAMVV YAPVDIPAMQ 1020 LVMGGGDSTY VALLPSGFAI LPGGPCISAK TNGSLLTVAF QILVNSQPTA KLTAESVDTV 1080 NNLIACTIKK IKAALHCDV

Sequence ? help Back to Top

Protein Sequence Length: 1099 aa Download sequence Send to blast

MAIVIELREA APRQVNGAIS TNEPSHALAF LLVTTFHTPT RKAFPKHSSR LLVLLSSPKA  60
ARLFPVVPSV QAFRLSNLDQ FLQLAGHESL HVPLLGAEPN WETFRGSVAS LLCAPCCEQT  120
VAVSTAVHTR SDRRFSATPS FHTSMDSNRR SLLRHVRKSP TNGDGHCGSI RGLIAAHRLK  180
PTDRSYAAKV SAVPLYSSAS EILARYVVAV WQRTCRRNVP CVRTIVCLAR DNEKDSTAPL  240
GAAAGAQSFI HRGRGRSVLV MVGTARGPPR KASWDGQPAR TWAEHSGGRR AWRSWTPGSR  300
WTTTRTLGGP LRRGQTWVRG PPDSRAAHTV KGDGELLVTV VVVWLSTLIA FFWKTPVRTN  360
DMSLTFGSAI VSHGREEWPH RGQRGLAEHP QSPHVHTGSV TRRSRLHGRV FFNLHEIIDS  420
LLNPSAWLHP NDTASVGNLQ SLEAIRDANL VWPRGPCMSK KKKKNGRARL KLNRTPPEDA  480
CPVRTRQRFG CYRPDHRHSV SHSIVQPPTP RHGDYPCPAL MVRRDRLASA CAFVSPQRPL  540
NSPTASHPSD PRHTVLAALT PRPAPTQIQP HRAPPSFPVD PGGVPSEEKQ TSGQSRGAAA  600
PNNTNARPID CPWLHILLQD QRPGLLLTCP AQGSTHGTLQ GKGGGAGEPS YCPVPGSLLL  660
PLLLLTCLAG SLRFHSAPSA ATGGGRAHEE RAAAQGMSFG VPRSLRRRRV XXXAGRDGGV  720
GRTGSSSAVR GGGIAATDAS EVVENGSLSA CDHADAVFSG GGSEDDADAG NPRKRKKRYN  780
RHTPHQIQQL EALFKQYPHP DEKQRAELSK RLGLEPRQIK FWFQNRRTQM KTQLERHENA  840
LLKQENDKLR AENQSVREAL TNLVCGNCGG PAMLGEVSLE EHHLRLENAR LRDELTHVTW  900
VEHTEYDEAS MHQLYRPLLQ SGLAFGAGRW LATLQRQWVS ASSAREWSKL DCLTGSIGAD  960
VRVMVRKSVD EPGVPPGVVL SAATSPTSTN QNSMLILQET CTDESGAMVV YAPVDIPAMQ  1020
LVMGGGDSTY VALLPSGFAI LPGGPCISAK TNGSLLTVAF QILVNSQPTA KLTAESVDTV  1080
NNLIACTIKK IKAALHCDV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	771	777	PRKRKKR
2	772	776	RKRKK

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP21042	4	5